RunPseudotime: Calculates the pseudotime of a object with multiple time...

In sbrn3/disscat: Calculates Distances Between Single Cell RNA Seq Categories

Description

Generally meant to enable you to find the pseudotime of a single cell type within a tissue when you have multiple time points.

Usage

RunPseudotime(seurat.object, subset.data = NULL, subset.value = NULL,
  group.data, group.begin, group.end, comp = 2, near.zero.var = TRUE,
  verbose = FALSE, thresh = 0.001)

Arguments

seurat.object	Seurat object of interest
subset.data	Name of metadata dataset to subset the data by
subset.value	Name of metadata value to subset the data by
group.data	Name of metadata data that desribes time points
group.begin	Starting time point
group.end	Ending time point
comp	number of plsda components to use
near.zero.var	see mixomics::plsda

Value

List containing the dataset with original pslda called 'extremes' the final dataset with pseudotime values calculated.

sbrn3/disscat documentation built on Dec. 12, 2019, 7:54 a.m.