RunPLSDA: Runs PLS-DA dimensionality reduction on seurat object

In sbrn3/disscat: Calculates Distances Between Single Cell RNA Seq Categories

Description

PLS-Discriminant Analysis (PLS-DA, Barker and Rayens, 2003) is a linear classification model that is able to predict the class of new samples.

Usage

RunPLSDA(seurat.object, group = NULL, assay = NULL, comp = 10,
  near.zero.var = FALSE)

Arguments

seurat.object	Object or a list of Seurat objects containing data
group	Seurat groups maximise the variability between
assay	Seurat assay which contains the count/expression data
comp	The number of components to generate

Details

Uses Mixomics PLS-DA function

Value

A seurat object with a plsda performed as dimensionality reduction

sbrn3/disscat documentation built on Dec. 12, 2019, 7:54 a.m.