Description Usage Arguments Value
Calculates the distance between the closet pair of points between two clusters.
1 2 | group_distance(seurat_object, group, reduction = "pca", dims = 1:30,
method, distance = "euclidean", output = "table")
|
seurat_object |
A seurat object |
group |
Seurat Categories or groups for which the distances between are calculated. Cell wise data. |
reduction |
Dimensionality reduction data to use |
dims |
Which dimensions to use |
method |
Cluster Distance methods to use. Options are "single", "complete", "average", "centroid", "ward", "mahalanobis". Further explanation for these methods is given in the details. |
distance |
Point to point distance to use. Options are "euclidean", "maximum", "manhattan", "canberra", "binary", "minkowski" |
output |
Output type. Default is "seurat" (Seurat S4 object), "table" (Table of distance data). |
Distance data
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