GetDistance: Get distance data from seurat object

In sbrn3/disscat: Calculates Distances Between Single Cell RNA Seq Categories

Description

Simple getter method to extract data frame of distances in seurat object.

Usage

GetDistance(seurat_object, group = NULL, split_by = NULL,
  method = "default")

Arguments

seurat_object	A seurat object. Contains the distance data.
group	Category that the distances were calculated between
split_by	Factor that the distances were split by
method	The distance function that was used. Options are "default" or "cluster" (GroupDistance()), "average" (AverageDistance()), "total" (TotalDistance), "internal" (InternalDistance)

Details

This does not calcualte the distances for any categories or cells. This is purely for indexing information from an object.

Value

Distance data frame.

sbrn3/disscat documentation built on Dec. 12, 2019, 7:54 a.m.