Files in selcenari/ceRNAnetsim
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/calc_perturbation.R
R/datasets.R
R/find_affected_nodes.R
R/find_iteration.R
R/find_node_perturbation.R
R/find_targeting_nodes.R
R/globals.R
R/priming_graph.R
R/simulate.R
R/simulate_vis.R
R/update_how.R
R/update_nodes.R
R/update_variables.R
R/vis_graph.R
README.md
data/TCGA_E9_A1N5_mirnanormal.rda
data/TCGA_E9_A1N5_mirnatumor.rda
data/TCGA_E9_A1N5_normal.rda
data/TCGA_E9_A1N5_tumor.rda
data/huge_example.rda
data/midsamp.rda
data/midsamp_new_counts.rda
data/minsamp.rda
data/mirtarbasegene.rda
data/new_counts.rda
inst/CITATION
man/TCGA_E9_A1N5_mirnanormal.Rd
man/TCGA_E9_A1N5_mirnatumor.Rd
man/TCGA_E9_A1N5_normal.Rd
man/TCGA_E9_A1N5_tumor.Rd
man/calc_perturbation.Rd
man/find_affected_nodes.Rd
man/find_iteration.Rd
man/find_node_perturbation.Rd
man/find_targeting_nodes.Rd
man/gene_knockdown.Rd
man/huge_example.Rd
man/midsamp.Rd
man/midsamp_new_counts.Rd
man/minsamp.Rd
man/mirtarbasegene.Rd
man/new_counts.Rd
man/normalize.Rd
man/prepare_rhs.Rd
man/prepare_rhs_once.Rd
man/priming_graph.Rd
man/simulate.Rd
man/simulate_vis.Rd
man/update_how.Rd
man/update_nodes.Rd
man/update_variables.Rd
man/vis_graph.Rd
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test-data_convertion.R
tests/testthat/test-iter_perturb.R
tests/testthat/test-significant_node_function.R
tests/testthat/test-updating_variables.R
vignettes/.gitignore
vignettes/auxiliary_commands.Rmd
vignettes/basic_usage.Rmd
vignettes/convenient_iteration.Rmd
vignettes/gifs/Minsamp_Graph_After_Each_Iteration.png
vignettes/gifs/con_iter_chunk3.gif
vignettes/gifs/con_iter_chunk4.gif
vignettes/gifs/con_iter_chunk7.gif
vignettes/gifs/con_iter_chunk8.gif
vignettes/gifs/model_vignette.png
vignettes/gifs/realexample.gif
vignettes/gifs/small_sample.gif
vignettes/gifs/small_sample_chunk10.png
vignettes/mirtarbase_example.Rmd
vignettes/ref.bib
