update_variables: Replaces new values with previous values of competing or...

In selcenari/ceRNAnetsim: Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)

Replaces new values with previous values of competing or miRNA counts.

Description

This function replaces new values with previous values of competing or miRNA counts.

Usage

update_variables(input_graph, current_counts)

Arguments

input_graph	The processed graph object.
current_counts	The additional df that provided by user.

Details

update_variables function provides updating edge variables to current values. If the microRNA or competing expression (or both) change (decreasing or increasing), this function switches the values that are found in a new dataset provided by user. But the current value dataset must be equal with initial dataset in terms of node name.

Value

the graph object.

Examples

data('minsamp')
data('new_counts')

 minsamp%>%
 priming_graph(Competing_expression, miRNA_expression,
     aff_factor = c(seed_type,energy), deg_factor = region)%>%
   update_variables(new_counts)
   #new_counts includes the current counts of nodes.

selcenari/ceRNAnetsim documentation built on Feb. 14, 2024, 4:20 a.m.