update_how: Converts the count value of the given node.

View source: R/update_how.R

update_howR Documentation

Converts the count value of the given node.

Description

this function converts the count value of the given node.

Usage

update_how(input_graph, node_name, how, knockdown = TRUE)

Arguments

input_graph

The graph object that processed in previous step/s.

node_name

The name of the node whose count is to be changed.

how

The change in terms of fold change.

knockdown

specifies gene knockdown with default TRUE

Details

update_how function calculates the current value of given mirna or gene node on the graph object. User must specify current value as fold change.

Value

the graph object.

Examples


data('minsamp')

priming_graph(minsamp, Competing_expression, miRNA_expression)%>%
   update_how('Gene1',3)

 priming_graph(minsamp, Competing_expression, miRNA_expression,
      aff_factor = c(seed_type,energy), deg_factor = region)%>%
   update_how('Gene1', 3)

   priming_graph(minsamp, Competing_expression, miRNA_expression,
       aff_factor = c(seed_type,energy), deg_factor = region)%>%
  update_how('Gene1', how=0, knockdown= TRUE)




selcenari/ceRNAnetsim documentation built on March 17, 2022, 6:37 p.m.