find_iteration: Finds the iteration which provides maximum affected node...

Description Usage Arguments Value Examples

View source: R/find_iteration.R

Description

searches the iteration that provides maximum affected node number. The user defines a symbolic iteration with .iter. The function calculates the number of affected nodes for each iteration and then selects the iteration that has maximum affected nodes' number.

Usage

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find_iteration(df, limit = 0.1, plot = FALSE)

Arguments

df

A tbl graph that includes the miRNA and competing targets triggered and simulated for number of cycles.

limit

The minimum amount of change of any node.

plot

If TRUE, returns a plot.

Value

It gives an iteration number to use in simulate() function.

Examples

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data('midsamp')

midsamp %>%
  priming_graph(Gene_expression, miRNA_expression) %>%
  update_how('Gene2',2) %>%
  simulate(10) %>%
  find_iteration(limit=0)

selcenari/ceRNAnetsim documentation built on Nov. 27, 2020, 1:27 a.m.