find_iteration: Finds the iteration which provides maximum affected node...

In selcenari/ceRNAnetsim: Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)

Finds the iteration which provides maximum affected node number

Description

searches the iteration that provides maximum affected node number. The user defines a symbolic iteration with .iter. The function calculates the number of affected nodes for each iteration and then selects the iteration that has maximum affected nodes' number.

Usage

find_iteration(df, limit = 0.1, plot = FALSE)

Arguments

df	A tbl graph that includes the miRNA and competing targets triggered and simulated for number of cycles.
limit	The minimum amount of change of any node.
plot	If TRUE, returns a plot.

Value

It gives an iteration number to use in simulate() function.

Examples

data('midsamp')

midsamp %>%
  priming_graph(Gene_expression, miRNA_expression) %>%
  update_how('Gene2',2) %>%
  simulate(10) %>%
  find_iteration(limit=0)

selcenari/ceRNAnetsim documentation built on Feb. 14, 2024, 4:20 a.m.