vis_graph: Provides visualisation of the graph.

In selcenari/ceRNAnetsim: Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)

Provides visualisation of the graph.

Description

'vis_graph' Provides visualisation of the graph.

Usage

vis_graph(
  input_graph,
  Competing_color = "green",
  mirna_color = "orange",
  Upregulation = "red",
  Downregulation = "blue",
  title = "GRAPH",
  layout = "kk"
)

Arguments

input_graph	The graph object.
Competing_color	The color of competing elements on the graph with 'green' default.
mirna_color	The color of miRNAs on the graph with 'orange' default.
Upregulation	The color of Upregulated elements on the graph with 'red' default.
Downregulation	The color of Downregulated elements on the graph with 'blue' default.
title	Title of the given graph.
layout	The layout that will be used for visualisation of the graph.

Details

vis_graph ensures the process to be followed.

Value

The graph object.

Examples

data('minsamp')
data('new_counts')

# Visualisation of graph in steady-state.

 priming_graph(minsamp, Competing_expression, miRNA_expression,
    aff_factor = c(seed_type,energy), deg_factor = region)%>%
   vis_graph()

# Visualisation of graph after the change.

 priming_graph(minsamp, Competing_expression, miRNA_expression,
    aff_factor = c(seed_type,energy), deg_factor = region)%>%
   update_variables(new_counts)%>%
   vis_graph()

selcenari/ceRNAnetsim documentation built on Feb. 14, 2024, 4:20 a.m.