README.md

ceRNAnetsim

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ceRNAnetsim helps to understanding complex miRNA:target interactions with the network based approach. It utilizes the amounts of miRNAs and their targets and interaction parameters optionally.

Installation

Installation of ceRNAnetsim:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ceRNAnetsim")

library(ceRNAnetsim)

Example

data("minsamp")

minsamp

priming_graph(minsamp, 
                competing_count = Competing_expression, 
                miRNA_count = miRNA_expression)

Local Files

The ceRNAnetsim provides various datasets for experimenting with package functions. These are:

Vignettes

The repository of ceRNAnetsim contents the vignettes that follow:

Also see package webpage

Issues

Contact us for any issue or bug via:



selcenari/ceRNAnetsim documentation built on Nov. 27, 2020, 1:27 a.m.