Man pages for selcenari/ceRNAnetsim
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)

calc_perturbationCalculates average expression changes of all nodes except...
find_iterationFinds the iteration which provides maximum affected node...
find_node_perturbationCalculates average expression changes of all (or specified)...
gene_knockdownKnocks down given node.
huge_examplehuge example
midsampmidsamp
midsamp_new_countsmidsamp_new_counts
minsampminsamp
mirtarbasegenemirtarbasegene
new_countsnew_counts
normalizenormalize
prepare_rhsCarries the variables from edge to node
prepare_rhs_onceCarries the variables from edge to node.
priming_graphConverts the given dataframe using first variable as...
simulateUtilizes the change in expression value/s as triggering.
simulate_visProvides visualisation of the graph in addition to simulate...
TCGA_E9_A1N5_mirnanormalTCGA_E9_A1N5_mirnanormal
TCGA_E9_A1N5_mirnatumorTCGA_E9_A1N5_mirnatumor
TCGA_E9_A1N5_normalTCGA_E9_A1N5_normal
TCGA_E9_A1N5_tumorTCGA_E9_A1N5_tumor
update_howConverts the count value of the given node.
update_nodesCarries variables from edge to node.
update_variablesReplaces new values with previous values of competing or...
vis_graphProvides visualisation of the graph.
selcenari/ceRNAnetsim documentation built on Nov. 27, 2020, 1:27 a.m.