Man pages for selcenari/ceRNAnetsim
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)
| calc_perturbation | Calculates average expression changes of all nodes except... |
| find_affected_nodes | Finds top affected nodes for perturbation from a particular... |
| find_iteration | Finds the iteration which provides maximum affected node... |
| find_node_perturbation | Calculates average expression changes of all (or specified)... |
| find_targeting_nodes | Finds potential affecting node for given particular target. |
| gene_knockdown | Knocks down given node. |
| huge_example | huge example |
| midsamp | midsamp |
| midsamp_new_counts | midsamp_new_counts |
| minsamp | minsamp |
| mirtarbasegene | mirtarbasegene |
| new_counts | new_counts |
| normalize | normalize |
| prepare_rhs | Carries the variables from edge to node |
| prepare_rhs_once | Carries the variables from edge to node. |
| priming_graph | Converts the given dataframe using first variable as... |
| simulate | Utilizes the change in expression value/s as triggering. |
| simulate_vis | Provides visualisation of the graph in addition to simulate... |
| TCGA_E9_A1N5_mirnanormal | TCGA_E9_A1N5_mirnanormal |
| TCGA_E9_A1N5_mirnatumor | TCGA_E9_A1N5_mirnatumor |
| TCGA_E9_A1N5_normal | TCGA_E9_A1N5_normal |
| TCGA_E9_A1N5_tumor | TCGA_E9_A1N5_tumor |
| update_how | Converts the count value of the given node. |
| update_nodes | Carries variables from edge to node. |
| update_variables | Replaces new values with previous values of competing or... |
| vis_graph | Provides visualisation of the graph. |
