AnyMatrix-class: The CellChat Class
In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data
AnyMatrix-class R Documentation
The CellChat Class
Description
The CellChat object is created from a single-cell transcriptomic data matrix, Seurat V3 or SingleCellExperiment object.
When inputting an data matrix, it takes a digital data matrices as input. Genes should be in rows and cells in columns. rownames and colnames should be included.
The class provides functions for data preprocessing, intercellular communication network inference, communication network analysis, and visualization.
Details
# Class definitions
sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.
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| AnyMatrix-class | R Documentation |
The CellChat Class
Description
The CellChat object is created from a single-cell transcriptomic data matrix, Seurat V3 or SingleCellExperiment object. When inputting an data matrix, it takes a digital data matrices as input. Genes should be in rows and cells in columns. rownames and colnames should be included. The class provides functions for data preprocessing, intercellular communication network inference, communication network analysis, and visualization.
Details
# Class definitions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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