identifyOverExpressedInteractions: Identify over-expressed ligand-receptor interactions (pairs)...

In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data

Identify over-expressed ligand-receptor interactions (pairs) within the used CellChatDB

Description

Identify over-expressed ligand-receptor interactions (pairs) within the used CellChatDB

Usage

identifyOverExpressedInteractions(
  object,
  features.name = "features",
  features = NULL,
  return.object = TRUE
)

Arguments

object	CellChat object
features.name	a char name used for assess the results in '[e-mail][[features.name]]'
features	a vector of features to use. default use all over-expressed genes in '[e-mail][[features.name]]'
return.object	whether returning a CellChat object. If FALSE, it will return a data frame containing the over-expressed ligand-receptor pairs

Value

A CellChat object or a data frame. If returning a CellChat object, a new element named 'LRsig' will be added into the list 'object@LR'

sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.