compareInteractions: Comparing the number of inferred communication links between...

In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data

Comparing the number of inferred communication links between different datasets

Description

Comparing the number of inferred communication links between different datasets

Usage

compareInteractions(
  object,
  measure = c("count", "weight"),
  color.use = NULL,
  group = NULL,
  group.levels = NULL,
  group.facet = NULL,
  group.facet.levels = NULL,
  n.row = 1,
  color.alpha = 1,
  legend.title = NULL,
  width = 0.6,
  title.name = NULL,
  digits = 3,
  xlabel = NULL,
  ylabel = NULL,
  remove.xtick = FALSE,
  show.legend = TRUE,
  x.lab.rot = FALSE,
  angle.x = 45,
  vjust.x = NULL,
  hjust.x = 1,
  size.text = 10
)

Arguments

object	A merged CellChat object
measure	"count" or "weight". "count": comparing the number of interactions; "weight": comparing the total interaction weights (strength)
color.use	defining the color for each group of datasets
group	a vector giving the groups of different datasets to define colors of the bar plot. Default: only one group and a single color
group.levels	the factor level in the defined group
group.facet	Name of one metadata column defining faceting groups
group.facet.levels	the factor level in the defined group.facet
n.row	Number of rows in facet_grid()
color.alpha	transparency
legend.title	legend title
width	bar width
title.name	main title of the plot
digits	integer indicating the number of decimal places (round) to be used when 'measure' is 'weight'.
xlabel	label of x-axis
ylabel	label of y-axis
remove.xtick	whether remove xtick
show.legend	whether show the legend
x.lab.rot, angle.x, vjust.x, hjust.x	adjusting parameters if rotating xtick.labels when x.lab.rot = TRUE
size.text	font size of the text

Value

A ggplot object

sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.