extractGeneSubsetFromPair: Extract the signaling gene names from ligand-receptor pairs
In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data
extractGeneSubsetFromPair R Documentation
Extract the signaling gene names from ligand-receptor pairs
Description
Extract the signaling gene names from ligand-receptor pairs
Usage
extractGeneSubsetFromPair(
pairLR,
object = NULL,
complex_input = NULL,
geneInfo = NULL,
combined = TRUE
)
Arguments
pairLR
data frame must contain columns named 'ligand' and 'receptor'
object
a CellChat object
complex_input
complex in CellChatDB databse
geneInfo
official gene symbol
combined
whether combining the ligand genes and receptor genes
sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.
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| extractGeneSubsetFromPair | R Documentation |
Extract the signaling gene names from ligand-receptor pairs
Description
Extract the signaling gene names from ligand-receptor pairs
Usage
extractGeneSubsetFromPair(
pairLR,
object = NULL,
complex_input = NULL,
geneInfo = NULL,
combined = TRUE
)
Arguments
pairLR |
data frame must contain columns named 'ligand' and 'receptor' |
object |
a CellChat object |
complex_input |
complex in CellChatDB databse |
geneInfo |
official gene symbol |
combined |
whether combining the ligand genes and receptor genes |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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