classifyAccession: Classify accessions

In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description

Classify accessions

Usage

classifyAccession(x, na.ignore = FALSE)

Arguments

x	Vector of accessions
na.ignore	Logical indicating whether NAs are ignored

Value

Accession class (error if input does not match any)

Supported accession classes

• [D|E|S]RP - study_accession

• [D|E|S]RS - sample_accession

• [D|E|S]RX - experiment_accession

• [D|E|S]RR - run_accession

• GSE - series_id

• GSM - gsm

NOTE: Input vector needs to contain accessions belonging to only one type at any given time, otherwise the function will generate an error.

Examples

# classifyAccession("GSM11111")
# classifyAccession(c("GSM11111", "GSE2222")) # Will throw error

ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.