dot-generateOutput_Accession: Generate File Output (Accession)

In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description

Generate File Output (Accession)

Usage

.generateOutput_Accession(df, ss = NULL, accession)

Arguments

df	Data frame to output (unfilter)
ss	A character vector with GSEs from .verifySuperseries
accession	A character vector with accessions for which the search was undertaken

Details

Orders the df, replaces tabs (in characteristics_ch1), filters rows as appropriate, outputs files.

Value

Nothing (generates relevant files)

Files created by .generateOutput_Accession

• ChIP-Seq - if present

• RNA-Seq - if present

• OTHER - if present

All the files are made available as sample sheets (.csv and .Rda) and database extracts (.csv, .Rda)

ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.