convertCategoriesToLibraryStrategyType: Convert from SRA-GEO Categories
In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data
Description
Usage
Arguments
Value
Examples
View source: R/Search_Anywhere.R
Description
Converts from SRA-GEO Categories to corresponding SRA library_strategy
and GEO (study) type.
For further details regarding available categories (and their
corresponding elements), inspect the SRA_GEO_Category_Conversion
object or see its documentation page: ?SRA_GEO_Category_Conversion.
Usage
1
Arguments
x
Character with a category (can be a vector).
NOTE: must match exactly (but matching is case insensitive)
Value
A list with a vector each for SRA_library_strategy and GEO_type
Examples
1
2
convertCategoriesToLibraryStrategyType("Transcriptome MA")
convertCategoriesToLibraryStrategyType("ChIP-Seq")
ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.
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Description Usage Arguments Value Examples
View source: R/Search_Anywhere.R
Description
Converts from SRA-GEO Categories to corresponding SRA library_strategy
and GEO (study) type.
For further details regarding available categories (and their
corresponding elements), inspect the SRA_GEO_Category_Conversion
object or see its documentation page: ?SRA_GEO_Category_Conversion.
Usage
1 |
Arguments
x |
Character with a category (can be a vector). NOTE: must match exactly (but matching is case insensitive) |
Value
A list with a vector each for SRA_library_strategy and GEO_type
Examples
1 2 | convertCategoriesToLibraryStrategyType("Transcriptome MA")
convertCategoriesToLibraryStrategyType("ChIP-Seq")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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