dot-batchedAccSearch: Make batched queries to databases

In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description

Make batched queries to databases

Usage

.batchedAccSearch(
  acc_vector,
  database_name,
  table_name,
  col_names,
  c_size = 500
)

Arguments

acc_vector	A character vector with accessions to search for (must belong to the same type)
database_name	A character with the name of the database connection
table_name	A character with the name of the database table
col_names	A character vector with column names to be returned
c_size	Number of items to search for in a batch (sqlite has a limit of 999 parameters within a single query)

Value

Data frame with results of the query

Examples

# startSpiderSeqRDemo()
# .batchedAccSearch(rep("SRR6823646", 10), "sra_con", "sra", "*", c_size = 1)

ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.