dot-detectControls: Detect controls in a sample sheet

In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description

Detect controls in a sample sheet

Usage

.detectControls(df)

Arguments

df	Data frame to be checked (with a subset of sra columns)

Value

Data frame with control column entries labelled as 'control' where appropriate

Logic of control detection

• NECESSARY - these string matches are required (entries not fulfilling all necessary conditions will not be considered for labelling)

• ANTIBODY - rows with non-empty sa_antibody column will only be labelled based on that field

• MATCH - one of these string matches are sufficient to label an entry (provided it fulfils NECESSARY conditions and that it has an EMPTY (NA) sa_antibody field)

• OTHERWISE - one of these string matches is sufficient to label an entry, but ONLY if none of the SRP members is labelled as input

ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.