dot-findSRAAccessionLevelColumnNames: Find SRA column names corresponding to accession levels (ORI)

In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description

Find SRA column names corresponding to accession levels (ORI)

Usage

.findSRAAccessionLevelColumnNames(
  acc_levels = c("run", "experiment", "sample", "study"),
  add_run_accession = TRUE,
  table_name = "sra_ft"
)

Arguments

acc_levels	Accession levels
add_run_accession	Logical indicating whether to add run_accession column name
table_name	A character with table name

Value

Vector with column names

NOTE: works on the original column names (from the database)

Examples

# .findSRAAccessionLevelColumnNames("run")

ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.