Files in stephaniehicks/benchmarkfdrData2019

Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

R/docs-casestudies.R R/docs-simulations.R R/zzz.R README.md inst/scripts/make-data/ChIP-seq/ChIPseq-CBP-csaw.Rmd inst/scripts/make-data/ChIP-seq/ChIPseq-h3k4me3-csaw.Rmd inst/scripts/make-data/ChIP-seq/ChIPseq-h3k4me3-promoters.Rmd inst/scripts/make-data/GSA/fgsea-human.Rmd inst/scripts/make-data/GSA/fgsea-mouse.Rmd inst/scripts/make-data/Microbiome/microbiome-baxter.Rmd inst/scripts/make-data/Microbiome/microbiome-enigma.Rmd inst/scripts/make-data/Microbiome/microbiome-goodrich.Rmd inst/scripts/make-data/Microbiome/microbiome-papa.Rmd inst/scripts/make-data/Microbiome/microbiome-schubert.Rmd inst/scripts/make-data/PolyesterInSilico/polyester-simulation.Rmd inst/scripts/make-data/R/colorPalette.R inst/scripts/make-data/R/common-BenchDesign.R inst/scripts/make-data/R/effectSizePlot.R inst/scripts/make-data/R/helpers-microbiome.R inst/scripts/make-data/R/helpers-simulations.R inst/scripts/make-data/R/plotCovariateBoxplots.R inst/scripts/make-data/R/plotFDRMethodsOverlap.R inst/scripts/make-data/R/plotMethodRank.R inst/scripts/make-data/R/plotsim_aggupset.R inst/scripts/make-data/R/plotsim_average.R inst/scripts/make-data/R/plotsim_single.R inst/scripts/make-data/R/plotsim_standardize.R inst/scripts/make-data/R/rank_scatter.R inst/scripts/make-data/R/rejections_scatter.R inst/scripts/make-data/R/rejections_scatter_bins.R inst/scripts/make-data/R/strat_hist.R inst/scripts/make-data/RNA-seq/RNAseq-gtex.Rmd inst/scripts/make-data/RNA-seq/RNAseq-mir200c.Rmd inst/scripts/make-data/Simulations/simulations-informative-cosine.Rmd inst/scripts/make-data/Simulations/simulations-informative-cubic.Rmd inst/scripts/make-data/Simulations/simulations-informative-sine.Rmd inst/scripts/make-data/Simulations/simulations-informative-step.Rmd inst/scripts/make-data/Simulations/simulations-null.Rmd inst/scripts/make-data/Simulations/simulations-uasettings-nonnull25.Rmd inst/scripts/make-data/Simulations/simulations-uasettings-t.Rmd inst/scripts/make-data/Simulations/simulations-uasettings.Rmd inst/scripts/make-data/Simulations/simulations-varyinginformativeness-discrete.Rmd inst/scripts/make-data/Simulations/simulations-varyinginformativeness-smooth.Rmd inst/scripts/make-data/Simulations/simulations-varyingntests.Rmd inst/scripts/make-data/Simulations/simulations-varyingpi0-t.Rmd inst/scripts/make-data/Simulations/simulations-varyingpi0.Rmd inst/scripts/make-data/YeastInSilico/yeast-simulation-bimodalalternative-highpi0.Rmd inst/scripts/make-data/YeastInSilico/yeast-simulation-bimodalalternative.Rmd inst/scripts/make-data/YeastInSilico/yeast-simulation-highpi0.Rmd inst/scripts/make-data/YeastInSilico/yeast-simulation.Rmd inst/scripts/make-data/scRNA-seq/scrnaseq-human-mast.Rmd inst/scripts/make-data/scRNA-seq/scrnaseq-human-scdd.Rmd inst/scripts/make-data/scRNA-seq/scrnaseq-human-wilcox.Rmd inst/scripts/make-data/scRNA-seq/scrnaseq-mouse-mast.Rmd inst/scripts/make-data/scRNA-seq/scrnaseq-mouse-scdd.Rmd inst/scripts/make-data/scRNA-seq/scrnaseq-mouse-wilcox.Rmd inst/scripts/make-metadata-casestudies.R inst/scripts/make-metadata-sims.R inst/scripts/make-metadata.R man/chipseq-cbp.Rd man/chipseq-h3k4me3.Rd man/gsa-human.Rd man/gsa-mouse.Rd man/gwas-bmi.Rd man/microbiome-baxter.Rd man/microbiome-enigma.Rd man/microbiome-goodrich.Rd man/microbiome-papa.Rd man/microbiome-schubert.Rd man/polyester-insilico.Rd man/rnaseq-brain.Rd man/rnaseq-mir200c.Rd man/scrnaseq-human.Rd man/scrnaseq-mouse.Rd man/sims-informative-cosine.Rd man/sims-informative-cubic.Rd man/sims-informative-sine.Rd man/sims-informative-step.Rd man/sims-null.Rd man/sims-uasettings-25.Rd man/sims-uasettings-t.Rd man/sims-uasettings.Rd man/sims-varyinginfo-discrete.Rd man/sims-varyinginfo-smooth.Rd man/sims-varyingntests.Rd man/sims-varyingpi0-t.Rd man/sims-varyingpi0.Rd man/yeast-insilico.Rd vignettes/benchmarkfdrData2019.Rmd