Man pages for stevexniu/scMatchmaker
Single Cell Matchmaker
| aggregateName | Aggregate Interaction Data |
| asSparse | Convert Matrix to Sparse Matrix |
| calcDensity | Calculate the Density of Feature |
| calcEMD | Calculate the Earth Mover's Distance Similarity for... |
| calcStrength | Calculate the Strength for Multiple Interacting Pair. |
| calcStrength.single | Calculate the Strength for Each Interacting Pair. |
| cellphonedb | CellPhoneDB Database |
| checkIdents | Check Cell Identity in Data |
| Complexing | Calculate Complex Interaction |
| convertData | Convert Interaction Matrix |
| Converting | Convert Interaction Data |
| decidua | Decidua Single Cell RNA-seq Dataset |
| decidua.annotation | Decidua Single Cell RNA-seq Annotation Metadata |
| Differing | Differential Interactions |
| filterInteractions | Filter Interaction Data |
| filterMatrix | Filter Matrix |
| findInteractions | Calculate the Interaction Strength |
| findInteractions.single | Calculate the Interaction Strength for Single Interaction |
| geomSketch | Run Geometric Sketching |
| heatmapPlot | Generate Heatmap |
| histogramPlot | Generate Interaction Histograms |
| LoadCellPhoneDB | Load CellPhoneDB Datasets |
| logCommand | Log Command |
| logTPM | Log-transformed Transcripts Per Million (logTPM) |
| Matchmaker-class | The Matchmaker S4 Class |
| Matchmaking | Run Matchmaker |
| matchNames | Match the Names of Inteactions Pairs in Expression Data. |
| mergeLists | Merge Two List |
| Merging | Merge Interactions |
| networkPlot | Generate Network Plot |
| Normalization | Data Normalization |
| orderMatrix | Order Matrix |
| PlotHeatmap | Interaction Heatmap |
| PlotHistogram | Interaction Histograms |
| PlotNetwork | Interaction Network Plot |
| PlotScatter | Interaction Scatter Plot |
| PlotSpot | Interaction Spot Plot |
| randomIdents | Generate Randomized Cell Identities |
| Resetting | Reset Interactions |
| rowScale | Scale Data by Row |
| Saving | Save Interaction Data |
| Scaling | Data Scaling |
| scatterPlot | Generate Scatter Plot |
| scMatchmaker-package | 'scMatchmaker' package |
| Screening | Screen for Interactions and Initialize Matchmaker Object |
| Selecting | Filter and Select Interaction Data |
| Sketching | Downsampling and Geometric Sketching |
| spotPlot | Generate Spot Plot |
| statsCells | Calculate the Statistics for each Cell. |
| Subsetting | Subset Interactions |
| zeroOne | Convert to Zero and One Range |
