PlotHistogram: Interaction Histograms

In stevexniu/scMatchmaker: Single Cell Matchmaker

Interaction Histograms

Description

Plot a histogram for a pair of ligand and receptor.

Usage

PlotHistogram(
  object,
  ligand,
  receptor,
  ligand.ident,
  receptor.ident,
  fix.breaks = TRUE,
  nbins = 100,
  freq = FALSE,
  cols.use = c("pink", "lightblue"),
  alpha = 0.7,
  ...
)

Arguments

object	Matchmaker object.
ligand	Ligand name.
receptor	Receptor name.
ligand.ident	Cell identity to plot for ligand.
receptor.ident	Cell identity to plot for receptor.
fix.breaks	Whether to fix the hist breaks using all the data. Default is TRUE.
nbins	Number of bins to use for histogram. Default is 100.
freq	Histogram of frequencies. Default is FALSE.
cols.use	Two color code used for ligand and receptor. Default is pink and lightblue.
alpha	Color transparency. Default is 0.7.
...	Additional argument passing to hist.

Value

Plot a histogram plot.

Examples

## Not run: 
 PlotHistogram(object, ligand = "CSF1", receptor = "CSF1R", 
 ligand.ident = "Tumor", receptor = "Macrophages")

## End(Not run)

stevexniu/scMatchmaker documentation built on June 2, 2022, 12:35 p.m.