aggregateName: Aggregate Interaction Data

In stevexniu/scMatchmaker: Single Cell Matchmaker

Aggregate Interaction Data

Description

Aggregate interaction data by row or column names.

Usage

aggregateName(
  data,
  aggregate = c("row", "column"),
  counted = FALSE,
  cutoff = 0,
  split.by = "_|[|]"
)

Arguments

data	Interaction data with rows of cell-cell paris and columns of gene-gene pairs.
aggregate	Type of aggregation used: row, using rownames (Default). column, using colnames.
counted	Binarize data to aggregate. Default is FALSE.
cutoff	Cutoff for interactions. Default is 0. Only values that are above this threshold will be considered.
split.by	interaction pairs. Default is "_" or "|".

Value

Returns the aggregated matrix.

stevexniu/scMatchmaker documentation built on June 2, 2022, 12:35 p.m.