histogramPlot: Generate Interaction Histograms

In stevexniu/scMatchmaker: Single Cell Matchmaker

Generate Interaction Histograms

Description

Generate a histogram for a pair of ligand and receptor.

Usage

histogramPlot(
  data,
  idents,
  ligand,
  receptor,
  ligand.ident,
  receptor.ident,
  breaks = NULL,
  nbins = 100,
  freq = FALSE,
  cols.use = c("pink", "lightblue"),
  alpha = 0.7,
  ...
)

Arguments

data	Data matrix to plot
idents	Cell type identity.
ligand	Ligand name.
receptor	Receptor name.
ligand.ident	Cell identity to plot for ligand.
receptor.ident	Cell identity to plot for receptor.
breaks	A vector giving the breakpoints between histogram cells. Default is NULL.
nbins	Number of bins to use for histogram when breaks option is NULL. Default is 100.
freq	Histogram of frequencies. Default is FALSE.
cols.use	Two color code used for ligand and receptor. Default is pink and lightblue.
alpha	Color transparency. Default is 0.7
...	Additional argument passing to hist.

Value

Plot a histogram.

stevexniu/scMatchmaker documentation built on June 2, 2022, 12:35 p.m.