cellphonedb: CellPhoneDB Database

In stevexniu/scMatchmaker: Single Cell Matchmaker

CellPhoneDB Database

Description

A preloaded CellPhoneDB database of ligand-receptor interaction pairs.

Usage

cellphonedb

Format

A data frame with 1574 rows (ligand-receptor pairs) and 15 columns (attributes):

genename_a, genename_b

interaction partner gene names

id_cp_interaction

CellPhoneDB interaction id

partner_a, partner_b

interaction partner uniprot ids

protein_name_a, protein_name_b

interaction partner protein names

annotation_strategy

annotation strategy

source

annotation strategy

subunit_a_1, subunit_a_2, subunit_a_3

interaction partner a complex subunits

subunit_b_1, subunit_b_2, subunit_b_3

interaction partner b complex subunits

Source

https://www.cellphonedb.org/

stevexniu/scMatchmaker documentation built on June 2, 2022, 12:35 p.m.