scatterPlot: Generate Scatter Plot

In stevexniu/scMatchmaker: Single Cell Matchmaker

Generate Scatter Plot

Description

Generate a scatter plot of interactions.

Usage

scatterPlot(
  data,
  idents,
  ident1,
  ident2,
  ligands,
  receptors,
  add.lines = FALSE,
  add.text = TRUE,
  background.col = "grey",
  ligand.col = "red",
  receptor.col = "blue",
  ligand.pch = 16,
  receptor.pch = 16,
  point.cex = 1,
  label.offset = 1,
  ligand.pos = 2,
  receptor.pos = 4,
  legend.pos = "topright",
  ...
)

Arguments

data	Data matrix to plot
idents	Cell type identity.
ident1	Cell identity 1 to plot.
ident2	Cell identity 2 to plot.
ligands	Ligand name.
receptors	Receptor name.
add.lines	Logic, draw lines between ligand-receptor pairs. Default is FALSE.
add.text	Logic, add text for ligands and receptors. Default is TRUE.
background.col	Background points color. Default is gray.
ligand.col	Ligand points color. Default is red.
receptor.col	Receptor points color. Default is blue.
ligand.pch	Point shape for ligands. Default is 16 (solid circle).
receptor.pch	Point shape for receptor. Default is 16 (solid circle).
point.cex	Point size. Default is 1.
label.offset	Text label offset. Default is 1.
ligand.pos	Ligand text position. Default is 2 (left). See text.
receptor.pos	Receptor text position. Default is 4 (right). See text.
legend.pos	Legend position. Default is 'topright'.
...	Additioanl arguments passed to plot.

Value

Return a scatter plot of interactions.

stevexniu/scMatchmaker documentation built on June 2, 2022, 12:35 p.m.