calcStrength: Calculate the Strength for Multiple Interacting Pair.
In stevexniu/scMatchmaker: Single Cell Matchmaker
calcStrength R Documentation
Calculate the Strength for Multiple Interacting Pair.
Description
Calculate the strength for multiple interacting pair. See details calcStrength.single.
Usage
calcStrength(ligand_mat, receptor_mat, f = c("+", "*"), threshold = 0)
Arguments
ligand_mat
Ligand expression matrix.
receptor_mat
Receptor expression matrix.
f
Functions used to calculate pair strength.
+, using sum of the pairs (Default).
*, using product of the pairs.
threshold
Threshold used for interaction products. Default is 0, therefore interaction product (ligand*receptor) equal or below 0 will be removed.
Value
Returns a matrix with calculated interacting strength.
stevexniu/scMatchmaker documentation built on June 2, 2022, 12:35 p.m.
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| calcStrength | R Documentation |
Calculate the Strength for Multiple Interacting Pair.
Description
Calculate the strength for multiple interacting pair. See details calcStrength.single.
Usage
calcStrength(ligand_mat, receptor_mat, f = c("+", "*"), threshold = 0)
Arguments
ligand_mat |
Ligand expression matrix. |
receptor_mat |
Receptor expression matrix. |
f |
Functions used to calculate pair strength.
|
threshold |
Threshold used for interaction products. Default is 0, therefore interaction product (ligand*receptor) equal or below 0 will be removed. |
Value
Returns a matrix with calculated interacting strength.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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