geomSketch: Run Geometric Sketching

In stevexniu/scMatchmaker: Single Cell Matchmaker

Run Geometric Sketching

Description

Run Geometric sketching sampling. See Hie et al. 2019 Cell Systems for details.

Usage

geomSketch(
  data,
  geom_size = 1000,
  n_pca = 10,
  scale = TRUE,
  seed = 1,
  which_python = Sys.which(names = "python3")
)

Arguments

data	An M x d sparse matrix or data.frame with M rows of data points and d columns of features.
geom_size	Size of geometric sketches to return. Default is 1000.
n_pca	Number of PCA dimensions to use. Default is 10.
scale	Whether to scale the data. Default is TRUE.
seed	Random seed number for PCA. Default is 1.
which_python	Path to python3 used.

Value

Returns geometric sketch IDs.

stevexniu/scMatchmaker documentation built on June 2, 2022, 12:35 p.m.