Build_AUCell_Rankings: Building AUCell gene rankings

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Building AUCell gene rankings

Description

Building AUCell gene rankings

Usage

Build_AUCell_Rankings(
  object,
  AUCell_buildRankings.file = "",
  nCores = NULL,
  plotStats = FALSE,
  splitByBlocks = FALSE
)

Arguments

object	The SingCellaR object.
AUCell_buildRankings.file	The output file of AUCell rankings.
nCores	The number of cores for running AUCell. Default 1
plotStats	is logical. If TRUE, the AUCell stats will be displayed.
splitByBlocks	Whether to split the matrix by blocks in the ranking calculation. Allows using multiple cores. FALSE by default. Required for using sparse matrices.

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.