identifyDifferentialGenes_for_all_clusters: Identify differentially expressed genes for all identified...

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Identify differentially expressed genes for all identified clusters

Description

Identify differentially expressed genes for all identified clusters

Usage

identifyDifferentialGenes_for_all_clusters(
  object,
  method = c("wilcoxon"),
  cluster.type = c("louvain", "walktrap", "kmeans", "merged_walktrap", "merged_louvain",
    "merged_kmeans"),
  min.log2FC = 0.2,
  min.expFraction = 0.2
)

Arguments

object	The SingCellaR object.
method	The differential gene expression testing method. Default 'wilcoxon' test
cluster.type	The type of clustering method.
min.log2FC	The minimum log2FC cutoff. Default 0.20
min.expFraction	The minimum fraction of expressing cell frequency cutoff. Default 0.2

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.