plot_3D_knn_graph_label_by_a_signature_gene_set: Plot KNN-Graph trajectory in 3D with the gene expression of a...

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot KNN-Graph trajectory in 3D with the gene expression of a signature gene set

Description

Plot KNN-Graph trajectory in 3D with the gene expression of a signature gene set

Usage

plot_3D_knn_graph_label_by_a_signature_gene_set(
  object,
  gene_list = c(),
  isNormalizedByHouseKeeping = F,
  vertext.size = 0.4,
  point.color1 = "black",
  point.color2 = "red"
)

Arguments

object	The SingCellaR object.
gene_list	The vector of gene names.
isNormalizedByHouseKeeping	is logical. If TRUE, the gene expression will be normalized by the expression of house keeping genes.
vertext.size	The node size. Default 0.4
point.color1	The low color gradient of gene expression. Default black
point.color2	The high color gradient of gene expression. Default red

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.