DoubletDetection_with_scrublet: DoubletDetection_with_scrublet

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

DoubletDetection_with_scrublet

Description

DoubletDetection_with_scrublet

Usage

DoubletDetection_with_scrublet(
  object,
  expected.doublet.rate = 0.03,
  seed = 2021L,
  PCs = 30L,
  min.cells = 10,
  min_gene_variablity = 85
)

Arguments

object	The SingCellaR object.
expected.doublet.rate	The expected fraction of transcriptomes that are doublets, typically 0.05-0.1.
seed	The seed number
PCs	The number of input PCA components
min.cells	Used for gene filtering prior to PCA. Genes expressed at fewer than min_counts, default=3, in fewer than min_cells are excluded.
min_gene_variablity	Used for gene filtering prior to PCA. Keep the most highly variable genes for the analysis.

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.