export_marker_genes_to_table: Export identified marker genes to table.

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Export identified marker genes to table.

Description

Export identified marker genes to table.

Usage

export_marker_genes_to_table(
  object,
  cluster.type = c("walktrap", "louvain", "kmeans", "merged_louvain", "merged_walktrap",
    "merged_kmeans"),
  n.TopGenes = 5,
  min.log2FC = 0.5,
  min.expFraction = 0.3,
  write.to.file = ""
)

Arguments

object	The SingCellaR object.
cluster.type	The clustering method name.
n.TopGenes	The number of top differential genes. Default 5
min.log2FC	The minimum log2FC.
min.expFraction	The minimum fraction of expressing cell frequency.
write.to.file	The output file name.

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.