identifyGSEAPrerankedGenes_for_all_clusters: Identify GSEA's preranked genes for all identified clusters

View source: R/SingleCellRNASeq.R

identifyGSEAPrerankedGenes_for_all_clustersR Documentation

Identify GSEA's preranked genes for all identified clusters

Description

Identify GSEA's preranked genes for all identified clusters

Usage

identifyGSEAPrerankedGenes_for_all_clusters(
  object,
  cluster.type = c("louvain", "kmeans", "merged_walktrap", "merged_louvain",
    "merged_kmeans"),
  fishers_exact_test = 0.1,
  min.expFraction = 0.01,
  min.log2FC = 0.1
)

Arguments

object

The SingCellaR object.

cluster.type

The type of clustering method.

fishers_exact_test

The fisher's exact test cutoff p-value. Default 0.1

min.expFraction

The minimum fraction of expressing cell frequency cutoff. Default 0.01

min.log2FC

The minimum log2FC cutoff. Default 0.1


supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.