View source: R/SingleCellRNASeq.R
identifyGSEAPrerankedGenes_for_all_clusters | R Documentation |
Identify GSEA's preranked genes for all identified clusters
identifyGSEAPrerankedGenes_for_all_clusters(
object,
cluster.type = c("louvain", "kmeans", "merged_walktrap", "merged_louvain",
"merged_kmeans"),
fishers_exact_test = 0.1,
min.expFraction = 0.01,
min.log2FC = 0.1
)
object |
The SingCellaR object. |
cluster.type |
The type of clustering method. |
fishers_exact_test |
The fisher's exact test cutoff p-value. Default 0.1 |
min.expFraction |
The minimum fraction of expressing cell frequency cutoff. Default 0.01 |
min.log2FC |
The minimum log2FC cutoff. Default 0.1 |
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