identifyGSEAPrerankedGenes: Identify GSEA preranked genes

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Identify GSEA preranked genes

Description

Identify GSEA preranked genes

Usage

identifyGSEAPrerankedGenes(
  method = c("wilcoxon"),
  objectA = objectA,
  objectB = objectB,
  cellsA = c(),
  cellsB = c(),
  write.to.file = "",
  min.log2FC = 0.1,
  min.expFraction = 0.01
)

Arguments

method	The differential gene expression testing method. Default 'wilcoxon' test
objectA	The SingCellaR object A
objectB	The SingCellaR object B
cellsA	The vector of cell names from object A
cellsB	The vector of cell names from object B
write.to.file	The output file name.
min.log2FC	The minimum log2FC cutoff. Default 0.1
min.expFraction	The minimum fraction of expressing cell frequency cutoff. Default 0.01

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.