plot_3D_knn_graph_label_by_gene: Plot KNN-Graph trajectory in 3D with the gene expression of...

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot KNN-Graph trajectory in 3D with the gene expression of selected genes

Description

Plot KNN-Graph trajectory in 3D with the gene expression of selected genes

Usage

plot_3D_knn_graph_label_by_gene(
  object,
  show.gene = c(),
  vertext.size = 0.4,
  point.color1 = "black",
  point.color2 = "red",
  edge.color = "gray45"
)

Arguments

object	The SingCellaR object.
show.gene	The vector of gene names.
vertext.size	The node size. Default 0.4
point.color1	The low color gradient of gene expression. Default black
point.color2	The high color gradient of gene expression. Default red
edge.color	The edge color. Default gray45

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.