identify_potentially_merging_clusters: Identify the clusters that potenntially can be merged.

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Identify the clusters that potenntially can be merged.

Description

Identify the clusters that potenntially can be merged.

Usage

identify_potentially_merging_clusters(
  object,
  cluster.type = c("louvain", "walktrap", "kmeans"),
  min.log2FC = 0.3,
  min.expFraction = 0.3,
  min.jaccard_similarity = 0.5
)

Arguments

object	The SingCellaR object.
cluster.type	The clustering method name.
min.log2FC	The minimum log2FC cutoff. Default 0.3
min.expFraction	The minimum fraction of expressing cell frequency cutoff. Default 0.3
min.jaccard_similarity	The minimum jaccard similarity.

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.