protein2EnsemblGeneNames: Retrieve ensembl gene ids from proteins

In sysbiomed/glmSparseNet: Network Centrality Metrics for Elastic-Net Regularized Models

Retrieve ensembl gene ids from proteins

Description

Retrieve ensembl gene ids from proteins

Usage

protein2EnsemblGeneNames(
  ensemblProteins,
  useCache = TRUE,
  verbose = FALSE,
  ensembl.proteins = deprecated(),
  use.cache = deprecated()
)

Arguments

ensemblProteins	character vector with gene names in ensembl_peptide_id format
useCache	Boolean indicating if biomaRt cache should be used
verbose	When using biomaRt in webservice mode and setting verbose to TRUE, the XML query to the webservice will be printed.
ensembl.proteins
use.cache

Value

a dataframe with external gene names, ensembl_peptide_id

Examples

protein2EnsemblGeneNames(c(
    "ENSP00000235382",
    "ENSP00000233944",
    "ENSP00000216911"
))

sysbiomed/glmSparseNet documentation built on Feb. 17, 2024, 1:38 p.m.