Files in sysbiomed/glmSparseNet

Network Centrality Metrics for Elastic-Net Regularized Models

.Rbuildignore

.github/workflows/check.yml

.github/workflows/coverage.yml

.github/workflows/lint.yml

.github/workflows/site.yml

.github/workflows/style.yml

.gitignore

.lintr

DESCRIPTION

NAMESPACE

NEWS.md R/balanced_data.R R/build_lambda.R R/cache.R R/centrality-utils.R R/color_symbol.R R/data.R R/degree_cor.R R/degree_cov.R R/deprecation-utils.R R/download.R R/external_apis.R R/glmSparseNet-package.R R/glm_degree.R R/glm_hub.R R/glm_orphan.R R/glm_sparse_net.R R/network_cor_parallel.R R/network_cov_parallel.R R/network_generic.R R/network_options.R R/onLoad.R R/options.R R/separate_2_groups_cox.R R/string_db.R README.Rmd

README.html

README.md

README_files/figure-gfm/call.kaplan-1.png

README_files/figure-gfm/fit.surv-1.png

README_files/figure-markdown_github/call.kaplan-1.png

README_files/figure-markdown_github/fit.surv-1.png

README_files/figure-markdown_github/hallmarks-1.png

data/string.network.700.cache.RData

inst/CITATION

inst/images/overview.png

man/balancedCvFolds.Rd man/buildLambda.Rd man/buildStringNetwork.Rd man/cv.glmSparseNet.Rd man/degreeCor.Rd man/degreeCov.Rd man/dot-baseDir.Rd man/dot-biomartLoad.Rd man/dot-buildFunctionDigest.Rd man/dot-cacheCompression.Rd man/dot-calcPenalty.Rd man/dot-calculateResult.Rd man/dot-combinedScore.Rd man/dot-createDirectoryForCache.Rd man/dot-curlWorkaround.Rd man/dot-degreeGeneric.Rd man/dot-digestCache.Rd man/dot-glmSparseNetPrivate.Rd man/dot-networkGenericParallel.Rd man/dot-networkWorker.Rd man/dot-runCache.Rd man/dot-saveRunCache.Rd man/dot-showMessage.Rd man/dot-tempdirCache.Rd man/dot-writeReadme.Rd man/downloadFileLocal.Rd man/ensemblGeneNames.Rd

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-maturing.svg

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-soft-deprecated.svg

man/figures/lifecycle-stable.svg

man/figures/lifecycle-superseded.svg

man/geneNames.Rd man/glmSparseNet-package.Rd man/glmSparseNet.Rd man/hallmarks.Rd man/heuristicScale.Rd man/hubHeuristic.Rd man/myColors.Rd man/mySymbols.Rd man/networkCorParallel.Rd man/networkCovParallel.Rd man/networkOptions.Rd man/orphanHeuristic.Rd man/protein2EnsemblGeneNames.Rd man/separate2GroupsCox.Rd man/string.network.700.cache.Rd man/stringDBhomoSapiens.Rd tests/testthat.R tests/testthat/helper-cache.R tests/testthat/helper-generate_data.R tests/testthat/test-balanced_cv.R tests/testthat/test-build_lambda.R tests/testthat/test-cache.R tests/testthat/test-color_symbol.R tests/testthat/test-degree_cor.R tests/testthat/test-degree_cov.R tests/testthat/test-deprecation-utils.R tests/testthat/test-download.R tests/testthat/test-external_apis.R tests/testthat/test-glmSparseNet.R tests/testthat/test-glm_degree.R tests/testthat/test-glm_hub.R tests/testthat/test-glm_orphan.R tests/testthat/test-network_cor_parallel.R tests/testthat/test-network_cov_parallel.R tests/testthat/test-network_options.R tests/testthat/test-onLoad.R tests/testthat/test-separate_2_groups_cox.R tests/testthat/test-string_db.R vignettes/example_brca_logistic.Rmd vignettes/example_brca_protein-protein-interactions_survival.Rmd vignettes/example_brca_survival.Rmd vignettes/example_prad_survival.Rmd vignettes/example_skcm_survival.Rmd vignettes/separate2GroupsCox.Rmd

sysbiomed/glmSparseNet documentation built on Feb. 17, 2024, 1:38 p.m.