NEWS.md

In sysbiomed/glmSparseNet: Network Centrality Metrics for Elastic-Net Regularized Models

glmSparseNet

Changes in 1.22.0

Breaking changes

• Adds experiment parameter to different glm* functions.
• Changing in hashing function to use rlang::hash that reduces a dependency.
• Deprecates hallmarks function as API has been shutdown.

Miscellaneous

• Use of native pipe instead of {magritrr}'s %>%
• Corrects styling and linter issues for better code quality and readability
• Starts to deprecates parameters using dot.case in favor of camelCase.
• Increases code coverage to 95%.

Changes in 1.14.3

• Corrects bug when calculating the penalty.factor from a matrix (as it was not applying the transformation function)

Changes in 1.14.2

• Corrects all CRAN deprecations (includes code from {loose.rock} in this package)

Changes in 1.11.0

• {sparsebn} has been disabled pending upstream corrections (examples from that package failed to pass)

Changes in version 1.2.0

• Depends on more recent version of {loose.rock} (previous was deprecated)
• Release of new Bioconductor 3.9

Changes in version 1.1.0

• Official release of glmSparseNet in Bioconductor

Changes in version 0.99.17

• Converts to 4 space indentation

Changes in version 0.99.15

• Speeds up ppi vignette

Changes in version 0.99.14

• Renamed functions to camelCase
• Renamed non-exported functions with '.' prefix
• Removed most methods, as suggested by Bioc reviewer
• Removed commented code
• Changed functions that handle tcga data to use TCGAutils package
• Many more described in https://github.com/Bioconductor/Contributions/issues/849#issuecomment-422594871

Changes in version 0.99.13

• Renamed draw.kaplan to separate2groups.cox

Changes in version 0.99.9

• Removed loose.rock functions from this package as they are published in CRAN

sysbiomed/glmSparseNet documentation built on Feb. 17, 2024, 1:38 p.m.