stringDBhomoSapiens: Download protein-protein interactions from STRING DB

In sysbiomed/glmSparseNet: Network Centrality Metrics for Elastic-Net Regularized Models

Download protein-protein interactions from STRING DB

Description

Download protein-protein interactions from STRING DB

Usage

stringDBhomoSapiens(
  version = "11.0",
  scoreThreshold = 0,
  removeText = TRUE,
  score_threshold = deprecated(),
  remove.text = deprecated()
)

Arguments

version	version of the database to use
scoreThreshold	remove scores below threshold
removeText	remove text mining-based scores
score_threshold
remove.text

Value

a data.frame with rows representing an interaction between two proteins, and columns the count of scores above the given score_threshold

Examples

stringDBhomoSapiens(scoreThreshold = 800)

sysbiomed/glmSparseNet documentation built on Feb. 17, 2024, 1:38 p.m.