GetGRangesFromEnsDb: Extract genomic ranges from EnsDb object

In timoast/signac: Analysis of Single-Cell Chromatin Data

Extract genomic ranges from EnsDb object

Description

Pulls the transcript information for all chromosomes from an EnsDb object. This wraps crunch and applies the extractor function to all chromosomes present in the EnsDb object.

Usage

GetGRangesFromEnsDb(
  ensdb,
  standard.chromosomes = TRUE,
  biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
  verbose = TRUE
)

Arguments

ensdb	An EnsDb object
standard.chromosomes	Keep only standard chromosomes
biotypes	Biotypes to keep
verbose	Display messages

timoast/signac documentation built on April 5, 2024, 1:34 a.m.