inter-range-methods: Inter-range transformations for ChromatinAssay objects

inter-range-methodsR Documentation

Inter-range transformations for ChromatinAssay objects

Description

The range, reduce, gaps, disjoin, isDisjoint, disjointBins methods are available for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'Seurat'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'ChromatinAssay'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'Seurat'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'ChromatinAssay'
gaps(x, start = NA, end = NA)

## S4 method for signature 'Seurat'
gaps(x, start = NA, end = NA)

## S4 method for signature 'ChromatinAssay'
disjoin(x, ...)

## S4 method for signature 'Seurat'
disjoin(x, ...)

## S4 method for signature 'ChromatinAssay'
isDisjoint(x, ...)

## S4 method for signature 'Seurat'
isDisjoint(x, ...)

## S4 method for signature 'ChromatinAssay'
disjointBins(x, ...)

## S4 method for signature 'Seurat'
disjointBins(x, ...)

Arguments

x

A ChromatinAssay object

...

Additional arguments

with.revmap

See inter-range-methods in the IRanges packages

na.rm

Ignored

drop.empty.ranges

See ?inter-range-methods

start, end

See ?inter-range-methods

Functions

  • range(Seurat): method for Seurat objects

  • reduce(ChromatinAssay): method for ChromatinAssay objects

  • reduce(Seurat): method for Seurat objects

  • gaps(ChromatinAssay): method for ChromatinAssay objects

  • gaps(Seurat): method for Seurat objects

  • disjoin(ChromatinAssay): method for ChromatinAssay objects

  • disjoin(Seurat): method for Seurat objects

  • isDisjoint(ChromatinAssay): method for ChromatinAssay objects

  • isDisjoint(Seurat): method for Seurat objects

  • disjointBins(ChromatinAssay): method for ChromatinAssay objects

  • disjointBins(Seurat): method for Seurat objects

See Also

  • inter-range-methods in the IRanges package.

  • inter-range-methods in the GenomicRanges package

  • ChromatinAssay-class


timoast/signac documentation built on Aug. 23, 2024, 1:48 a.m.