#' @include utils.R stack.R
NULL
#' Web Application Framework for R
#'
#' Shiny makes it incredibly easy to build interactive web applications with R.
#' Automatic "reactive" binding between inputs and outputs and extensive
#' prebuilt widgets make it possible to build beautiful, responsive, and
#' powerful applications with minimal effort.
#'
#' The Shiny tutorial at <http://shiny.rstudio.com/tutorial/> explains
#' the framework in depth, walks you through building a simple application, and
#' includes extensive annotated examples.
#'
#' @seealso [shiny-options] for documentation about global options.
#'
#' @name shiny-package
#' @aliases shiny
#' @docType package
#' @import htmltools httpuv xtable digest R6 mime
NULL
# It's necessary to Depend on methods so Rscript doesn't fail. It's necessary
# to import(methods) in NAMESPACE so R CMD check doesn't complain. This
# approach isn't foolproof because Rscript -e pkgname::func() doesn't actually
# cause methods to be attached, but it's not a problem for shiny::runApp()
# since we call require(shiny) as part of loading the app.
#' @import methods
NULL
createUniqueId <- function(bytes, prefix = "", suffix = "") {
withPrivateSeed({
paste(
prefix,
paste(
format(as.hexmode(sample(256, bytes, replace = TRUE)-1), width=2),
collapse = ""),
suffix,
sep = ""
)
})
}
toJSON <- function(x, ..., dataframe = "columns", null = "null", na = "null",
auto_unbox = TRUE, digits = getOption("shiny.json.digits", 16),
use_signif = TRUE, force = TRUE, POSIXt = "ISO8601", UTC = TRUE,
rownames = FALSE, keep_vec_names = TRUE, strict_atomic = TRUE) {
if (strict_atomic) {
x <- I(x)
}
# I(x) is so that length-1 atomic vectors get put in [].
jsonlite::toJSON(x, dataframe = dataframe, null = null, na = na,
auto_unbox = auto_unbox, digits = digits, use_signif = use_signif,
force = force, POSIXt = POSIXt, UTC = UTC, rownames = rownames,
keep_vec_names = keep_vec_names, json_verbatim = TRUE, ...)
}
# If the input to jsonlite::fromJSON is not valid JSON, it will try to fetch a
# URL or read a file from disk. We don't want to allow that.
safeFromJSON <- function(txt, ...) {
if (!jsonlite::validate(txt)) {
stop("Argument 'txt' is not a valid JSON string.")
}
jsonlite::fromJSON(txt, ...)
}
# Call the workerId func with no args to get the worker id, and with an arg to
# set it.
#
# A worker ID is an opaque string that is passed in by the caller. The ID is
# added as a URL parameter (?w=<worker_id>) to any URLs that need to refer back
# to the app. This can be used as a hint for load balancers to direct requests
# to this particular process. Since the worker refers to a process, it's
# inherently global, and should never need to change.
workerId <- local({
.workerId <- NULL
function(value) {
if (missing(value)) {
.workerId
} else {
if (!is.null(.workerId)) {
if (!identical(value, .workerId)) {
warning("Ignoring workerId value--",
"it's already been set to a different value")
}
} else {
.workerId <<- value
}
}
}
})
#' Session object
#'
#' Shiny server functions can optionally include `session` as a parameter
#' (e.g. `function(input, output, session)`). The session object is an
#' environment that can be used to access information and functionality
#' relating to the session. The following list describes the items available
#' in the environment; they can be accessed using the `$` operator (for
#' example, `session$clientData$url_search`).
#'
#' @return
#' \item{allowReconnect(value)}{
#' If `value` is `TRUE` and run in a hosting environment (Shiny
#' Server or Connect) with reconnections enabled, then when the session ends
#' due to the network connection closing, the client will attempt to
#' reconnect to the server. If a reconnection is successful, the browser will
#' send all the current input values to the new session on the server, and
#' the server will recalculate any outputs and send them back to the client.
#' If `value` is `FALSE`, reconnections will be disabled (this is
#' the default state). If `"force"`, then the client browser will always
#' attempt to reconnect. The only reason to use `"force"` is for testing
#' on a local connection (without Shiny Server or Connect).
#' }
#' \item{clientData}{
#' A [reactiveValues()] object that contains information about the client.
#' \itemize{
#' \item{`allowDataUriScheme` is a logical value that indicates whether
#' the browser is able to handle URIs that use the `data:` scheme.
#' }
#' \item{`pixelratio` reports the "device pixel ratio" from the web browser,
#' or 1 if none is reported. The value is 2 for Apple Retina displays.
#' }
#' \item{`singletons` - for internal use}
#' \item{`url_protocol`, `url_hostname`, `url_port`,
#' `url_pathname`, `url_search`, `url_hash_initial`
#' and `url_hash` can be used to get the components of the URL
#' that was requested by the browser to load the Shiny app page.
#' These values are from the browser's perspective, so neither HTTP
#' proxies nor Shiny Server will affect these values. The
#' `url_search` value may be used with [parseQueryString()]
#' to access query string parameters.
#' }
#' }
#' `clientData` also contains information about each output.
#' \code{output_\var{outputId}_width} and \code{output_\var{outputId}_height}
#' give the dimensions (using `offsetWidth` and `offsetHeight`) of
#' the DOM element that is bound to \code{\var{outputId}}, and
#' \code{output_\var{outputId}_hidden} is a logical that indicates whether
#' the element is hidden. These values may be `NULL` if the output is
#' not bound.
#' }
#' \item{input}{
#' The session's `input` object (the same as is passed into the Shiny
#' server function as an argument).
#' }
#' \item{isClosed()}{A function that returns `TRUE` if the client has
#' disconnected.
#' }
#' \item{ns(id)}{
#' Server-side version of [`ns <- NS(id)`][NS]. If bare IDs need to be
#' explicitly namespaced for the current module, `session$ns("name")`
#' will return the fully-qualified ID.
#' }
#' \item{onEnded(callback)}{
#' Synonym for `onSessionEnded`.
#' }
#' \item{onFlush(func, once=TRUE)}{
#' Registers a function to be called before the next time (if `once=TRUE`)
#' or every time (if `once=FALSE`) Shiny flushes the reactive system.
#' Returns a function that can be called with no arguments to cancel the
#' registration.
#' }
#' \item{onFlushed(func, once=TRUE)}{
#' Registers a function to be called after the next time (if `once=TRUE`)
#' or every time (if `once=FALSE`) Shiny flushes the reactive system.
#' Returns a function that can be called with no arguments to cancel the
#' registration.
#' }
#' \item{onSessionEnded(callback)}{
#' Registers a function to be called after the client has disconnected.
#' Returns a function that can be called with no arguments to cancel the
#' registration.
#' }
#' \item{output}{
#' The session's `output` object (the same as is passed into the Shiny
#' server function as an argument).
#' }
#' \item{reactlog}{
#' For internal use.
#' }
#' \item{registerDataObj(name, data, filterFunc)}{
#' Publishes any R object as a URL endpoint that is unique to this session.
#' `name` must be a single element character vector; it will be used
#' to form part of the URL. `filterFunc` must be a function that takes
#' two arguments: `data` (the value that was passed into
#' `registerDataObj`) and `req` (an environment that implements
#' the Rook specification for HTTP requests). `filterFunc` will be
#' called with these values whenever an HTTP request is made to the URL
#' endpoint. The return value of `filterFunc` should be a Rook-style
#' response.
#' }
#' \item{reload()}{
#' The equivalent of hitting the browser's Reload button. Only works if the
#' session is actually connected.
#' }
#' \item{request}{
#' An environment that implements the Rook specification for HTTP requests.
#' This is the request that was used to initiate the websocket connection
#' (as opposed to the request that downloaded the web page for the app).
#' }
#' \item{userData}{
#' An environment for app authors and module/package authors to store whatever
#' session-specific data they want.
#' }
#' \item{resetBrush(brushId)}{
#' Resets/clears the brush with the given `brushId`, if it exists on
#' any `imageOutput` or `plotOutput` in the app.
#' }
#' \item{sendCustomMessage(type, message)}{
#' Sends a custom message to the web page. `type` must be a
#' single-element character vector giving the type of message, while
#' `message` can be any jsonlite-encodable value. Custom messages
#' have no meaning to Shiny itself; they are used soley to convey information
#' to custom JavaScript logic in the browser. You can do this by adding
#' JavaScript code to the browser that calls
#' \code{Shiny.addCustomMessageHandler(type, function(message){...})}
#' as the page loads; the function you provide to
#' `addCustomMessageHandler` will be invoked each time
#' `sendCustomMessage` is called on the server.
#' }
#' \item{sendBinaryMessage(type, message)}{
#' Similar to `sendCustomMessage`, but the message must be a raw vector
#' and the registration method on the client is
#' \code{Shiny.addBinaryMessageHandler(type, function(message){...})}. The
#' message argument on the client will be a
#' [DataView](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/DataView).
#' }
#' \item{sendInputMessage(inputId, message)}{
#' Sends a message to an input on the session's client web page; if the input
#' is present and bound on the page at the time the message is received, then
#' the input binding object's `receiveMessage(el, message)` method will
#' be called. `sendInputMessage` should generally not be called directly
#' from Shiny apps, but through friendlier wrapper functions like
#' [updateTextInput()].
#' }
#' \item{setBookmarkExclude(names)}{
#' Set input names to be excluded from bookmarking.
#' }
#' \item{getBookmarkExclude()}{
#' Returns the set of input names to be excluded from bookmarking.
#' }
#' \item{onBookmark(fun)}{
#' Registers a function that will be called just before bookmarking state.
#' }
#' \item{onBookmarked(fun)}{
#' Registers a function that will be called just after bookmarking state.
#' }
#' \item{onRestore(fun)}{
#' Registers a function that will be called when a session is restored, before
#' all other reactives, observers, and render functions are run.
#' }
#' \item{onRestored(fun)}{
#' Registers a function that will be called when a session is restored, after
#' all other reactives, observers, and render functions are run.
#' }
#' \item{doBookmark()}{
#' Do bookmarking and invoke the onBookmark and onBookmarked callback functions.
#' }
#' \item{exportTestValues()}{
#' Registers expressions for export in test mode, available at the test
#' snapshot URL.
#' }
#' \item{getTestSnapshotUrl(input=TRUE, output=TRUE, export=TRUE,
#' format="json")}{
#' Returns a URL for the test snapshots. Only has an effect when the
#' `shiny.testmode` option is set to TRUE. For the input, output, and
#' export arguments, TRUE means to return all of these values. It is also
#' possible to specify by name which values to return by providing a
#' character vector, as in `input=c("x", "y")`. The format can be
#' "rds" or "json".
#' }
#'
#' @name session
NULL
#' Namespaced IDs for inputs/outputs
#'
#' The `NS` function creates namespaced IDs out of bare IDs, by joining
#' them using `ns.sep` as the delimiter. It is intended for use in Shiny
#' modules. See <http://shiny.rstudio.com/articles/modules.html>.
#'
#' Shiny applications use IDs to identify inputs and outputs. These IDs must be
#' unique within an application, as accidentally using the same input/output ID
#' more than once will result in unexpected behavior. The traditional solution
#' for preventing name collisions is *namespaces*; a namespace is to an ID
#' as a directory is to a file. Use the `NS` function to turn a bare ID
#' into a namespaced one, by combining them with `ns.sep` in between.
#'
#' @param namespace The character vector to use for the namespace. This can have
#' any length, though a single element is most common. Length 0 will cause the
#' `id` to be returned without a namespace, and length 2 will be
#' interpreted as multiple namespaces, in increasing order of specificity
#' (i.e. starting with the top-level namespace).
#' @param id The id string to be namespaced (optional).
#' @return If `id` is missing, returns a function that expects an id string
#' as its only argument and returns that id with the namespace prepended.
#' @seealso <http://shiny.rstudio.com/articles/modules.html>
#' @export
NS <- function(namespace, id = NULL) {
if (length(namespace) == 0)
ns_prefix <- character(0)
else
ns_prefix <- paste(namespace, collapse = ns.sep)
f <- function(id) {
if (length(id) == 0)
return(ns_prefix)
if (length(ns_prefix) == 0)
return(id)
paste(ns_prefix, id, sep = ns.sep)
}
if (missing(id)) {
f
} else {
f(id)
}
}
#' @rdname NS
#' @export
ns.sep <- "-"
#' @include utils.R
ShinySession <- R6Class(
'ShinySession',
private = list(
# There are some private items with a leading "."; except for the dot, these
# items share a name with a public item.
websocket = 'ANY',
invalidatedOutputValues = 'Map',
invalidatedOutputErrors = 'Map',
inputMessageQueue = list(), # A list of inputMessages to send when flushed
cycleStartActionQueue = list(), # A list of actions to perform to start a cycle
.outputs = list(), # Keeps track of all the output observer objects
.outputOptions = list(), # Options for each of the output observer objects
progressKeys = 'character',
showcase = FALSE,
fileUploadContext = 'FileUploadContext',
.input = 'ANY', # Internal ReactiveValues object for normal input sent from client
.clientData = 'ANY', # Internal ReactiveValues object for other data sent from the client
busyCount = 0L, # Number of observer callbacks that are pending. When 0, we are idle
closedCallbacks = 'Callbacks',
flushCallbacks = 'Callbacks',
flushedCallbacks = 'Callbacks',
inputReceivedCallbacks = 'Callbacks',
bookmarkCallbacks = 'Callbacks',
bookmarkedCallbacks = 'Callbacks',
restoreCallbacks = 'Callbacks',
restoredCallbacks = 'Callbacks',
bookmarkExclude = character(0), # Names of inputs to exclude from bookmarking
getBookmarkExcludeFuns = list(),
timingRecorder = 'ShinyServerTimingRecorder',
testMode = FALSE, # Are we running in test mode?
testExportExprs = list(),
outputValues = list(), # Saved output values (for testing mode)
currentOutputName = NULL, # Name of the currently-running output
outputInfo = list(), # List of information for each output
testSnapshotUrl = character(0),
sendResponse = function(requestMsg, value) {
if (is.null(requestMsg$tag)) {
warning("Tried to send response for untagged message; method: ",
requestMsg$method)
return()
}
private$sendMessage(
response = list(tag = requestMsg$tag, value = value)
)
},
sendErrorResponse = function(requestMsg, error) {
if (is.null(requestMsg$tag))
return()
private$sendMessage(
response = list(tag = requestMsg$tag, error = error)
)
},
write = function(json) {
if (self$closed){
return()
}
traceOption <- getOption('shiny.trace', FALSE)
if (isTRUE(traceOption) || traceOption == "send")
message('SEND ',
gsub('(?m)base64,[a-zA-Z0-9+/=]+','[base64 data]',json,perl=TRUE))
private$websocket$send(json)
},
sendMessage = function(...) {
# This function is a wrapper for $write
msg <- list(...)
if (anyUnnamed(msg)) {
stop("All arguments to sendMessage must be named.")
}
private$write(toJSON(msg))
},
getOutputOption = function(outputName, propertyName, defaultValue) {
opts <- private$.outputOptions[[outputName]]
if (is.null(opts))
return(defaultValue)
result <- opts[[propertyName]]
if (is.null(result))
return(defaultValue)
return(result)
},
withCurrentOutput = function(name, expr) {
if (!is.null(private$currentOutputName)) {
stop("Nested calls to withCurrentOutput() are not allowed.")
}
promises::with_promise_domain(
createVarPromiseDomain(private, "currentOutputName", name),
expr
)
},
shouldSuspend = function(name) {
# Find corresponding hidden state clientData variable, with the format
# "output_foo_hidden". (It comes from .clientdata_output_foo_hidden
# on the JS side)
# Some tricky stuff: instead of accessing names using input$names(),
# get the names directly via input$.values, to avoid triggering reactivity.
# Need to handle cases where the output object isn't actually used
# in the web page; in these cases, there's no output_foo_hidden flag,
# and hidden should be TRUE. In other words, NULL and TRUE should map to
# TRUE, FALSE should map to FALSE.
hidden <- private$.clientData$.values$get(paste0("output_", name, "_hidden"))
if (is.null(hidden)) hidden <- TRUE
return(hidden && private$getOutputOption(name, 'suspendWhenHidden', TRUE))
},
registerSessionEndCallbacks = function() {
# This is to be called from the initialization. It registers functions
# that are called when a session ends.
# Clear file upload directories, if present
self$onSessionEnded(private$fileUploadContext$rmUploadDirs)
},
# Modules (scopes) call this to register a function that returns a vector
# of names to exclude from bookmarking. The function should return
# something like c("scope1-x", "scope1-y"). This doesn't use a Callback
# object because the return values of the functions are needed, but
# Callback$invoke() discards return values.
registerBookmarkExclude = function(fun) {
len <- length(private$getBookmarkExcludeFuns) + 1
private$getBookmarkExcludeFuns[[len]] <- fun
},
# Save output values and errors. This is only used for testing mode.
storeOutputValues = function(values = NULL) {
private$outputValues <- mergeVectors(private$outputValues, values)
},
enableTestSnapshot = function() {
private$testSnapshotUrl <- self$registerDataObj("shinytest", NULL,
function(data, req) {
if (!isTRUE(private$testMode)) {
return()
}
params <- parseQueryString(req$QUERY_STRING)
# The format of the response that will be sent back. Defaults to
# "json" unless requested otherwise. The only other valid value is
# "rds".
format <- params$format %OR% "json"
values <- list()
if (!is.null(params$input)) {
allInputs <- isolate(
reactiveValuesToList(self$input, all.names = TRUE)
)
# If params$input is "1", return all; otherwise return just the
# inputs that are named in params$input, like "x,y,z".
if (params$input == "1") {
values$input <- allInputs
} else {
items <- strsplit(params$input, ",")[[1]]
items <- intersect(items, names(allInputs))
values$input <- allInputs[items]
}
# Apply preprocessor functions for inputs that have them.
values$input <- lapply(
stats::setNames(names(values$input), names(values$input)),
function(name) {
preprocess <- private$getSnapshotPreprocessInput(name)
preprocess(values$input[[name]])
}
)
values$input <- sortByName(values$input)
}
if (!is.null(params$output)) {
if (params$output == "1") {
values$output <- private$outputValues
} else {
items <- strsplit(params$output, ",")[[1]]
items <- intersect(items, names(private$outputValues))
values$output <- private$outputValues[items]
}
# Filter out those outputs that have the snapshotExclude attribute.
exclude_idx <- vapply(names(values$output), function(name) {
isTRUE(attr(private$.outputs[[name]], "snapshotExclude", TRUE))
}, logical(1))
values$output <- values$output[!exclude_idx]
# Apply snapshotPreprocess functions for outputs that have them.
values$output <- lapply(
stats::setNames(names(values$output), names(values$output)),
function(name) {
preprocess <- private$getSnapshotPreprocessOutput(name)
preprocess(values$output[[name]])
}
)
values$output <- sortByName(values$output)
}
if (!is.null(params$export)) {
if (params$export == "1") {
values$export <- isolate(
lapply(private$testExportExprs, function(item) {
eval(item$expr, envir = item$env)
})
)
} else {
items <- strsplit(params$export, ",")[[1]]
items <- intersect(items, names(private$testExportExprs))
values$export <- isolate(
lapply(private$testExportExprs[items], function(item) {
eval(item$expr, envir = item$env)
})
)
}
values$export <- sortByName(values$export)
}
# Make sure input, output, and export are all named lists (at this
# point, they could be unnamed if they are empty lists). This is so
# that the resulting object is represented as an object in JSON
# instead of an array, and so that the RDS data structure is of a
# consistent type.
values <- lapply(values, asNamed)
if (length(values) == 0) {
return(httpResponse(400, "text/plain",
"None of export, input, or output requested."
))
}
if (identical(format, "json")) {
content <- toJSON(values, pretty = TRUE)
httpResponse(200, "application/json", content)
} else if (identical(format, "rds")) {
tmpfile <- tempfile("shinytest", fileext = ".rds")
saveRDS(values, tmpfile)
on.exit(unlink(tmpfile), add = TRUE)
content <- readBin(tmpfile, "raw", n = file.info(tmpfile)$size)
httpResponse(200, "application/octet-stream", content)
} else {
httpResponse(400, "text/plain", paste("Invalid format requested:", format))
}
}
)
},
# Get the snapshotPreprocessOutput function for an output name. If no preprocess
# function has been set, return the identity function.
getSnapshotPreprocessOutput = function(name) {
fun <- attr(private$.outputs[[name]], "snapshotPreprocess", exact = TRUE)
fun %OR% identity
},
# Get the snapshotPreprocessInput function for an input name. If no preprocess
# function has been set, return the identity function.
getSnapshotPreprocessInput = function(name) {
fun <- private$.input$getMeta(name, "shiny.snapshot.preprocess")
fun %OR% identity
},
# See cycleStartAction
startCycle = function() {
# TODO: This should check for busyCount == 0L, and remove the checks from
# the call sites
if (length(private$cycleStartActionQueue) > 0) {
head <- private$cycleStartActionQueue[[1L]]
private$cycleStartActionQueue <- private$cycleStartActionQueue[-1L]
# After we execute the current cycleStartAction (head), there may be
# more items left on the queue. If the current busyCount > 0, then that
# means an async task is running; whenever that task finishes, it will
# decrement the busyCount back to 0 and a startCycle will then be
# scheduled. But if the current busyCount is 0, it means that either
# busyCount was incremented and then decremented; OR that running head()
# never touched busyCount (one example of the latter is that an input
# changed that didn't actually cause any observers to be invalidated,
# i.e. an input that's used in the body of an observeEvent). Because of
# the possibility of the latter case, we need to conditionally schedule
# a startCycle ourselves to ensure that the remaining queue items get
# processed.
#
# Since we can't actually tell whether head() increment and decremented
# busyCount, it's possible we're calling startCycle spuriously; that's
# OK, it's essentially a no-op in that case.
on.exit({
if (private$busyCount == 0L && length(private$cycleStartActionQueue) > 0L) {
later::later(function() {
if (private$busyCount == 0L) {
private$startCycle()
}
})
}
}, add = TRUE)
head()
}
invisible()
}
),
public = list(
restoreContext = NULL,
progressStack = 'Stack', # Stack of progress objects
input = 'reactivevalues', # Externally-usable S3 wrapper object for .input
output = 'ANY', # Externally-usable S3 wrapper object for .outputs
clientData = 'reactivevalues', # Externally-usable S3 wrapper object for .clientData
token = 'character', # Used to identify this instance in URLs
files = 'Map', # For keeping track of files sent to client
downloads = 'Map',
closed = logical(0),
request = 'ANY', # Websocket request object
singletons = character(0), # Tracks singleton HTML fragments sent to the page
userData = 'environment',
cache = NULL, # A cache object used in the session
user = NULL,
groups = NULL,
initialize = function(websocket) {
private$websocket <- websocket
self$closed <- FALSE
# TODO: Put file upload context in user/app-specific dir if possible
private$invalidatedOutputValues <- Map$new()
private$invalidatedOutputErrors <- Map$new()
private$fileUploadContext <- FileUploadContext$new()
private$closedCallbacks <- Callbacks$new()
private$flushCallbacks <- Callbacks$new()
private$flushedCallbacks <- Callbacks$new()
private$inputReceivedCallbacks <- Callbacks$new()
private$.input <- ReactiveValues$new(dedupe = FALSE, label = "input")
private$.clientData <- ReactiveValues$new(dedupe = TRUE, label = "clientData")
private$timingRecorder <- ShinyServerTimingRecorder$new()
self$progressStack <- Stack$new()
self$files <- Map$new()
self$downloads <- Map$new()
self$userData <- new.env(parent = emptyenv())
self$input <- .createReactiveValues(private$.input, readonly=TRUE)
self$clientData <- .createReactiveValues(private$.clientData, readonly=TRUE)
self$output <- .createOutputWriter(self)
self$token <- createUniqueId(16)
private$.outputs <- list()
private$.outputOptions <- list()
self$cache <- MemoryCache$new()
private$bookmarkCallbacks <- Callbacks$new()
private$bookmarkedCallbacks <- Callbacks$new()
private$restoreCallbacks <- Callbacks$new()
private$restoredCallbacks <- Callbacks$new()
private$testMode <- .globals$testMode
private$enableTestSnapshot()
private$registerSessionEndCallbacks()
if (!is.null(websocket$request$HTTP_SHINY_SERVER_CREDENTIALS)) {
try({
creds <- safeFromJSON(websocket$request$HTTP_SHINY_SERVER_CREDENTIALS)
self$user <- creds$user
self$groups <- creds$groups
}, silent=FALSE)
}
# session$request should throw an error if httpuv doesn't have
# websocket$request, but don't throw it until a caller actually
# tries to access session$request
delayedAssign('request', websocket$request, assign.env = self)
private$sendMessage(
config = list(
workerId = workerId(),
sessionId = self$token,
user = self$user
)
)
},
startTiming = function(guid) {
if (!is.null(guid)) {
private$timingRecorder$start(guid)
self$onFlush(private$timingRecorder$stop)
}
},
requestFlush = function() {
appsNeedingFlush$set(self$token, self)
},
.scheduleTask = function(millis, callback) {
scheduleTask(millis, callback)
},
.now = function(){
getTimeMs()
},
rootScope = function() {
self
},
makeScope = function(namespace) {
ns <- NS(namespace)
# Private items for this scope. Can't be part of the scope object because
# `$<-.session_proxy` doesn't allow assignment on overidden names.
bookmarkCallbacks <- Callbacks$new()
restoreCallbacks <- Callbacks$new()
restoredCallbacks <- Callbacks$new()
bookmarkExclude <- character(0)
scope <- createSessionProxy(self,
input = .createReactiveValues(private$.input, readonly = TRUE, ns = ns),
output = .createOutputWriter(self, ns = ns),
sendInputMessage = function(inputId, message) {
.subset2(self, "sendInputMessage")(ns(inputId), message)
},
registerDataObj = function(name, data, filterFunc) {
.subset2(self, "registerDataObj")(ns(name), data, filterFunc)
},
ns = ns,
makeScope = function(namespace) {
self$makeScope(ns(namespace))
},
setBookmarkExclude = function(names) {
bookmarkExclude <<- names
},
getBookmarkExclude = function() {
bookmarkExclude
},
onBookmark = function(fun) {
if (!is.function(fun) || length(fun) != 1) {
stop("`fun` must be a function that takes one argument")
}
bookmarkCallbacks$register(fun)
},
onBookmarked = function(fun) {
stop("onBookmarked() can't be used in a module.")
},
onRestore = function(fun) {
if (!is.function(fun) || length(fun) != 1) {
stop("`fun` must be a function that takes one argument")
}
restoreCallbacks$register(fun)
},
onRestored = function(fun) {
if (!is.function(fun) || length(fun) != 1) {
stop("`fun` must be a function that takes one argument")
}
restoredCallbacks$register(fun)
},
exportTestValues = function(..., quoted_ = FALSE, env_ = parent.frame()) {
if (quoted_) {
dots <- list(...)
} else {
dots <- eval(substitute(alist(...)))
}
if (anyUnnamed(dots))
stop("exportTestValues: all arguments must be named.")
names(dots) <- ns(names(dots))
do.call(
.subset2(self, "exportTestValues"),
c(dots, quoted_ = TRUE, env_ = env_),
quote = TRUE
)
}
)
# Given a char vector, return a logical vector indicating which of those
# strings are names of things in the namespace.
filterNamespace <- function(x) {
nsString <- paste0(namespace, ns.sep)
substr(x, 1, nchar(nsString)) == nsString
}
# Given a char vector of namespaced names, return a char vector of corresponding
# names with namespace prefix removed.
unNamespace <- function(x) {
if (!all(filterNamespace(x))) {
stop("x contains strings(s) that do not have namespace prefix ", namespace)
}
nsString <- paste0(namespace, ns.sep)
substring(x, nchar(nsString) + 1)
}
# Given a restore state object (a list), return a modified version that's
# scoped to this namespace.
scopeRestoreState <- function(state) {
# State is a list. We need to copy and transform some things for the
# scope.
scopeState <- state
# `values` is an environment and we don't want to modify the original.
scopeState$values <- new.env(parent = emptyenv())
# Keep only inputs that are in the scope, and rename them
scopeState$input <- scopeState$input[filterNamespace(names(scopeState$input))]
names(scopeState$input) <- unNamespace(names(scopeState$input))
# Same for values. This is an environment so we have to handle a little
# differently.
origNames <- names(state$values)
origNames <- origNames[filterNamespace(origNames)]
lapply(origNames, function(origName) {
scopedName <- unNamespace(origName)
scopeState$values[[scopedName]] <- state$values[[origName]]
})
if (!is.null(state$dir)) {
dir <- file.path(state$dir, namespace)
if (dirExists(dir))
scopeState$dir <- dir
}
scopeState
}
# When scope is created, register these bookmarking callbacks on the main
# session object. They will invoke the scope's own callbacks, if any are
# present.
self$onBookmark(function(state) {
# Exit if no user-defined callbacks.
if (bookmarkCallbacks$count() == 0)
return()
scopeState <- ShinySaveState$new(scope$input, scope$getBookmarkExclude())
# Create subdir for this scope
if (!is.null(state$dir)) {
scopeState$dir <- file.path(state$dir, namespace)
if (!dirExists(scopeState$dir)) {
res <- dir.create(scopeState$dir)
if (res == FALSE) {
stop("Error creating subdirectory for scope ", namespace)
}
}
}
# Invoke the callback on the scopeState object
bookmarkCallbacks$invoke(scopeState)
# Copy `values` from scopeState to state, adding namespace
if (length(scopeState$values) != 0) {
if (anyUnnamed(scopeState$values)) {
stop("All scope values in must be named.")
}
lapply(names(scopeState$values), function(origName) {
scopedName <- ns(origName)
state$values[[scopedName]] <- scopeState$values[[origName]]
})
}
})
self$onRestore(function(state) {
# Exit if no user-defined callbacks.
if (restoreCallbacks$count() == 0)
return()
scopeState <- scopeRestoreState(state)
# Invoke user callbacks
restoreCallbacks$invoke(scopeState)
})
self$onRestored(function(state) {
# Exit if no user-defined callbacks.
if (restoredCallbacks$count() == 0)
return()
scopeState <- scopeRestoreState(state)
# Invoke user callbacks
restoredCallbacks$invoke(scopeState)
})
# Returns the excluded names with the scope's ns prefix on them.
private$registerBookmarkExclude(function() {
excluded <- scope$getBookmarkExclude()
ns(excluded)
})
scope
},
ns = function(id) {
NS(NULL, id)
},
# Freeze a value until the flush cycle completes
freezeValue = function(x, name) {
if (!is.reactivevalues(x))
stop("x must be a reactivevalues object")
impl <- .subset2(x, 'impl')
key <- .subset2(x, 'ns')(name)
impl$freeze(key)
self$onFlushed(function() impl$thaw(key))
},
onSessionEnded = function(sessionEndedCallback) {
"Registers the given callback to be invoked when the session is closed
(i.e. the connection to the client has been severed). The return value
is a function which unregisters the callback. If multiple callbacks are
registered, the order in which they are invoked is not guaranteed."
return(private$closedCallbacks$register(sessionEndedCallback))
},
onEnded = function(endedCallback) {
"Synonym for onSessionEnded"
return(self$onSessionEnded(endedCallback))
},
onInputReceived = function(callback) {
"Registers the given callback to be invoked when the session receives
new data from the client."
return(private$inputReceivedCallbacks$register(callback))
},
unhandledError = function(e) {
self$close()
},
close = function() {
if (!self$closed) {
private$websocket$close()
}
},
wsClosed = function() {
self$closed <- TRUE
for (output in private$.outputs) {
output$suspend()
}
# ..stacktraceon matches with the top-level ..stacktraceoff..
private$closedCallbacks$invoke(onError = printError, ..stacktraceon = TRUE)
},
isClosed = function() {
return(self$closed)
},
isEnded = function() {
return(self$isClosed())
},
setShowcase = function(value) {
private$showcase <- !is.null(value) && as.logical(value)
},
allowReconnect = function(value) {
if (!(identical(value, TRUE) || identical(value, FALSE) || identical(value, "force"))) {
stop('value must be TRUE, FALSE, or "force"')
}
private$write(toJSON(list(allowReconnect = value)))
},
defineOutput = function(name, func, label) {
"Binds an output generating function to this name. The function can either
take no parameters, or have named parameters for \\code{name} and
\\code{shinysession} (in the future this list may expand, so it is a good idea
to also include \\code{...} in your function signature)."
# jcheng 08/31/2012: User submitted an example of a dynamically calculated
# name not working unless name was eagerly evaluated. Yikes!
force(name)
# If overwriting an output object, destroy the previous copy of it
if (!is.null(private$.outputs[[name]])) {
private$.outputs[[name]]$destroy()
}
if (is.null(func)) {
# If func is null, give it an "empty" output function so it can go
# through the logic below. If we simply returned at this point, the
# previous output (if any) would continue to show in the client.
func <- missingOutput
}
if (is.function(func)) {
# Extract any output attributes attached to the render function. These
# will be attached to the observer after it's created.
outputAttrs <- attr(func, "outputAttrs", TRUE)
# Save this for getOutput purposes
outputAttrs$renderFunc <- func
funcFormals <- formals(func)
# ..stacktraceon matches with the top-level ..stacktraceoff.., because
# the observer we set up below has ..stacktraceon=FALSE
func <- wrapFunctionLabel(func, paste0("output$", name), ..stacktraceon = TRUE)
if (length(funcFormals) != 0) {
orig <- func
func <- function() {
orig(name=name, shinysession=self)
}
}
# Preserve source reference and file information when formatting the
# label for display in the reactive graph
srcref <- attr(label, "srcref")
srcfile <- attr(label, "srcfile")
label <- sprintf('output$%s', name)
attr(label, "srcref") <- srcref
attr(label, "srcfile") <- srcfile
obs <- observe(..stacktraceon = FALSE, {
private$sendMessage(recalculating = list(
name = name, status = 'recalculating'
))
# This shinyCallingHandlers should maybe be at a higher level,
# to include the $then/$catch calls below?
hybrid_chain(
hybrid_chain(
{
private$withCurrentOutput(name, {
shinyCallingHandlers(func())
})
},
catch = function(cond) {
if (inherits(cond, "shiny.custom.error")) {
if (isTRUE(getOption("show.error.messages"))) printError(cond)
structure(list(), class = "try-error", condition = cond)
} else if (inherits(cond, "shiny.output.cancel")) {
structure(list(), class = "cancel-output")
} else if (inherits(cond, "shiny.silent.error")) {
# Don't let shiny.silent.error go through the normal stop
# path of try, because we don't want it to print. But we
# do want to try to return the same looking result so that
# the code below can send the error to the browser.
structure(list(), class = "try-error", condition = cond)
} else {
if (isTRUE(getOption("show.error.messages"))) printError(cond)
if (getOption("shiny.sanitize.errors", FALSE)) {
cond <- simpleError(paste("An error has occurred. Check your",
"logs or contact the app author for",
"clarification."))
}
invisible(structure(list(), class = "try-error", condition = cond))
}
}
),
function(value) {
# Needed so that Shiny knows to flush the outputs. Even if no
# outputs/errors are queued, it's necessary to flush so that the
# client knows that progress is over.
self$requestFlush()
private$sendMessage(recalculating = list(
name = name, status = 'recalculated'
))
if (inherits(value, "cancel-output")) {
return()
}
private$invalidatedOutputErrors$remove(name)
private$invalidatedOutputValues$remove(name)
if (inherits(value, 'try-error')) {
cond <- attr(value, 'condition')
type <- setdiff(class(cond), c('simpleError', 'error', 'condition'))
private$invalidatedOutputErrors$set(
name,
list(message = cond$message,
call = utils::capture.output(print(cond$call)),
type = if (length(type)) type))
}
else
private$invalidatedOutputValues$set(name, value)
}
)
}, suspended=private$shouldSuspend(name), label=label)
# If any output attributes were added to the render function attach
# them to observer.
lapply(names(outputAttrs), function(name) {
attr(obs, name) <- outputAttrs[[name]]
})
obs$onInvalidate(function() {
self$showProgress(name)
})
private$.outputs[[name]] <- obs
if (is.null(private$.outputOptions[[name]]))
private$.outputOptions[[name]] <- list()
}
else {
stop(paste("Unexpected", class(func), "output for", name))
}
},
getOutput = function(name) {
attr(private$.outputs[[name]], "renderFunc", exact = TRUE)
},
flushOutput = function() {
if (private$busyCount > 0)
return()
appsNeedingFlush$remove(self$token)
if (self$isClosed())
return()
# This is the only place in the session where the restoreContext is
# flushed.
if (!is.null(self$restoreContext))
self$restoreContext$flushPending()
# Return TRUE if there's any stuff to send to the client.
hasPendingUpdates <- function() {
# Even though progressKeys isn't sent to the client, we use it in this
# check. This is because if it is non-empty, sending `values` to the
# client tells it that the flushReact loop is finished, and the client
# then knows to stop showing progress.
return(
length(private$progressKeys) != 0 ||
length(private$invalidatedOutputValues) != 0 ||
length(private$invalidatedOutputErrors) != 0 ||
length(private$inputMessageQueue) != 0
)
}
withReactiveDomain(self, {
# ..stacktraceon matches with the top-level ..stacktraceoff..
private$flushCallbacks$invoke(..stacktraceon = TRUE)
# Schedule execution of onFlushed callbacks
on.exit({
withReactiveDomain(self, {
# ..stacktraceon matches with the top-level ..stacktraceoff..
private$flushedCallbacks$invoke(..stacktraceon = TRUE)
})
}, add = TRUE)
if (!hasPendingUpdates()) {
# Normally, if there are no updates, simply return without sending
# anything to the client. But if we are in test mode, we still want to
# send a message with blank `values`, so that the client knows that
# any changed inputs have been received by the server and processed.
if (isTRUE(private$testMode)) {
private$sendMessage( values = list() )
}
return(invisible())
}
private$progressKeys <- character(0)
values <- as.list(private$invalidatedOutputValues)
private$invalidatedOutputValues <- Map$new()
errors <- as.list(private$invalidatedOutputErrors)
private$invalidatedOutputErrors <- Map$new()
inputMessages <- private$inputMessageQueue
private$inputMessageQueue <- list()
if (isTRUE(private$testMode)) {
private$storeOutputValues(mergeVectors(values, errors))
}
private$sendMessage(
errors = errors,
values = values,
inputMessages = inputMessages
)
})
},
# Schedule an action to execute not (necessarily) now, but when no observers
# that belong to this session are busy executing. This helps prevent (but
# does not guarantee) inputs and reactive values from changing underneath
# async observers as they run.
cycleStartAction = function(callback) {
private$cycleStartActionQueue <- c(private$cycleStartActionQueue, list(callback))
# If no observers are running in this session, we're safe to proceed.
# Otherwise, startCycle() will be called later, via decrementBusyCount().
if (private$busyCount == 0L) {
private$startCycle()
}
},
showProgress = function(id) {
'Send a message to the client that recalculation of the output identified
by \\code{id} is in progress. There is currently no mechanism for
explicitly turning off progress for an output component; instead, all
progress is implicitly turned off when flushOutput is next called.'
# If app is already closed, be sure not to show progress, otherwise we
# will get an error because of the closed websocket
if (self$closed)
return()
if (id %in% private$progressKeys)
return()
private$progressKeys <- c(private$progressKeys, id)
self$sendProgress('binding', list(id = id))
},
sendProgress = function(type, message) {
private$sendMessage(
progress = list(type = type, message = message)
)
},
sendNotification = function(type, message) {
private$sendMessage(
notification = list(type = type, message = message)
)
},
sendModal = function(type, message) {
private$sendMessage(
modal = list(type = type, message = message)
)
},
dispatch = function(msg) {
method <- paste('@', msg$method, sep='')
func <- try(self[[method]], silent = TRUE)
if (inherits(func, 'try-error')) {
private$sendErrorResponse(msg, paste('Unknown method', msg$method))
}
value <- try(do.call(func, as.list(append(msg$args, msg$blobs))),
silent=TRUE)
if (inherits(value, 'try-error')) {
private$sendErrorResponse(msg, conditionMessage(attr(value, 'condition')))
}
else {
private$sendResponse(msg, value)
}
},
sendBinaryMessage = function(type, message) {
typeBytes <- charToRaw(type)
if (length(typeBytes) > 255) {
stop("'type' argument is too long")
}
private$write(c(as.raw(length(typeBytes)), typeBytes, message))
},
sendCustomMessage = function(type, message) {
data <- list()
data[[type]] <- message
private$sendMessage(custom = data)
},
sendInputMessage = function(inputId, message) {
data <- list(id = inputId, message = message)
# Add to input message queue
private$inputMessageQueue[[length(private$inputMessageQueue) + 1]] <- data
# Needed so that Shiny knows to actually flush the input message queue
self$requestFlush()
},
onFlush = function(flushCallback, once = TRUE) {
if (!isTRUE(once)) {
return(private$flushCallbacks$register(flushCallback))
} else {
dereg <- private$flushCallbacks$register(function() {
dereg()
flushCallback()
})
return(dereg)
}
},
onFlushed = function(flushedCallback, once = TRUE) {
if (!isTRUE(once)) {
return(private$flushedCallbacks$register(flushedCallback))
} else {
dereg <- private$flushedCallbacks$register(function() {
dereg()
flushedCallback()
})
return(dereg)
}
},
getCurrentOutputInfo = function() {
name <- private$currentOutputName
if (is.null(name)) {
return(NULL)
}
tmp_info <- private$outputInfo[[name]] %OR% list(name = name)
# cd_names() returns names of all items in clientData, without taking a
# reactive dependency. It is a function and it's memoized, so that we do
# the (relatively) expensive isolate(names(...)) call only when needed,
# and at most one time in this function.
.cd_names <- NULL
cd_names <- function() {
if (is.null(.cd_names)) {
.cd_names <<- isolate(names(self$clientData))
}
.cd_names
}
# If we don't already have width for this output info, see if it's
# present, and if so, add it.
if (! ("width" %in% names(tmp_info)) ) {
width_name <- paste0("output_", name, "_width")
if (width_name %in% cd_names()) {
tmp_info$width <- reactive({
self$clientData[[width_name]]
})
}
}
if (! ("height" %in% names(tmp_info)) ) {
height_name <- paste0("output_", name, "_height")
if (height_name %in% cd_names()) {
tmp_info$height <- reactive({
self$clientData[[height_name]]
})
}
}
private$outputInfo[[name]] <- tmp_info
private$outputInfo[[name]]
},
createBookmarkObservers = function() {
# This registers observers for bookmarking to work.
# Get bookmarking config
store <- getShinyOption("bookmarkStore", default = "disable")
if (store == "disable")
return()
# Warn if trying to enable save-to-server bookmarking on a version of SS,
# SSP, or Connect that doesn't support it.
if (store == "server" && inShinyServer() &&
is.null(getShinyOption("save.interface")))
{
showNotification(
"This app tried to enable saved-to-server bookmarking, but it is not supported by the hosting environment.",
duration = NULL, type = "warning", session = self
)
return()
}
withReactiveDomain(self, {
# This observer fires when the bookmark button is clicked.
observeEvent(self$input[["._bookmark_"]], {
self$doBookmark()
})
# If there was an error initializing the current restore context, show
# notification in the client.
observe({
rc <- getCurrentRestoreContext()
if (!is.null(rc$initErrorMessage)) {
showNotification(
paste("Error in RestoreContext initialization:", rc$initErrorMessage),
duration = NULL, type = "error"
)
}
})
# Run the onRestore function at the beginning of the flush cycle, but after
# the server function has been executed.
observe({
if (private$restoreCallbacks$count() > 0) {
tryCatch(
withLogErrors(
isolate({
rc <- getCurrentRestoreContext()
if (rc$active) {
restoreState <- getCurrentRestoreContext()$asList()
private$restoreCallbacks$invoke(restoreState)
}
})
),
error = function(e) {
showNotification(
paste0("Error calling onRestore callback: ", e$message),
duration = NULL, type = "error"
)
}
)
}
}, priority = 1000000)
# Run the onRestored function after the flush cycle completes and information
# is sent to the client.
self$onFlushed(function() {
if (private$restoredCallbacks$count() > 0) {
tryCatch(
withLogErrors(
isolate({
rc <- getCurrentRestoreContext()
if (rc$active) {
restoreState <- getCurrentRestoreContext()$asList()
private$restoredCallbacks$invoke(restoreState)
}
})
),
error = function(e) {
msg <- paste0("Error calling onRestored callback: ", e$message)
showNotification(msg, duration = NULL, type = "error")
}
)
}
})
}) # withReactiveDomain
},
setBookmarkExclude = function(names) {
private$bookmarkExclude <- names
},
getBookmarkExclude = function() {
scopedExcludes <- lapply(private$getBookmarkExcludeFuns, function(f) f())
scopedExcludes <- unlist(scopedExcludes)
c(private$bookmarkExclude, scopedExcludes)
},
onBookmark = function(fun) {
if (!is.function(fun) || length(fun) != 1) {
stop("`fun` must be a function that takes one argument")
}
private$bookmarkCallbacks$register(fun)
},
onBookmarked = function(fun) {
if (!is.function(fun) || length(fun) != 1) {
stop("`fun` must be a function that takes one argument")
}
private$bookmarkedCallbacks$register(fun)
},
onRestore = function(fun) {
if (!is.function(fun) || length(fun) != 1) {
stop("`fun` must be a function that takes one argument")
}
private$restoreCallbacks$register(fun)
},
onRestored = function(fun) {
if (!is.function(fun) || length(fun) != 1) {
stop("`fun` must be a function that takes one argument")
}
private$restoredCallbacks$register(fun)
},
doBookmark = function() {
# Get bookmarking store config
store <- getShinyOption("bookmarkStore", default = "disable")
if (store == "disable")
return()
tryCatch(
withLogErrors({
saveState <- ShinySaveState$new(
input = self$input,
exclude = self$getBookmarkExclude(),
onSave = function(state) {
private$bookmarkCallbacks$invoke(state)
}
)
if (store == "server") {
url <- saveShinySaveState(saveState)
} else if (store == "url") {
url <- encodeShinySaveState(saveState)
} else {
stop("Unknown store type: ", store)
}
clientData <- self$clientData
url <- paste0(
clientData$url_protocol, "//",
clientData$url_hostname,
if (nzchar(clientData$url_port)) paste0(":", clientData$url_port),
clientData$url_pathname,
"?", url
)
# If onBookmarked callback was provided, invoke it; if not call
# the default.
if (private$bookmarkedCallbacks$count() > 0) {
private$bookmarkedCallbacks$invoke(url)
} else {
showBookmarkUrlModal(url)
}
}),
error = function(e) {
msg <- paste0("Error bookmarking state: ", e$message)
showNotification(msg, duration = NULL, type = "error")
}
)
},
exportTestValues = function(..., quoted_ = FALSE, env_ = parent.frame()) {
# Get a named list of unevaluated expressions.
if (quoted_) {
dots <- list(...)
} else {
dots <- eval(substitute(alist(...)))
}
if (anyUnnamed(dots))
stop("exportTestValues: all arguments must be named.")
# Create a named list where each item is a list with an expression and
# environment in which to eval the expression.
items <- lapply(dots, function(expr) {
list(expr = expr, env = env_)
})
private$testExportExprs <- mergeVectors(private$testExportExprs, items)
},
getTestSnapshotUrl = function(input = TRUE, output = TRUE, export = TRUE,
format = "json") {
reqString <- function(group, value) {
if (isTRUE(value))
paste0(group, "=1")
else if (is.character(value))
paste0(group, "=", paste(value, collapse = ","))
else
""
}
paste(
private$testSnapshotUrl,
reqString("input", input),
reqString("output", output),
reqString("export", export),
paste0("format=", format),
sep = "&"
)
},
reactlog = function(logEntry) {
# Use sendCustomMessage instead of sendMessage, because the handler in
# shiny-showcase.js only has access to public API of the Shiny object.
if (private$showcase) {
srcref <- logEntry$srcref
srcfile <- logEntry$srcfile
if (!is.null(srcref) && !is.null(srcfile)) {
# only send needed information, not all of reactlog info.
self$sendCustomMessage("showcase-src", list(srcref = srcref, srcfile = srcfile))
}
}
},
reload = function() {
private$sendMessage(reload = TRUE)
},
sendInsertUI = function(selector, multiple, where, content) {
private$sendMessage(
`shiny-insert-ui` = list(
selector = selector,
multiple = multiple,
where = where,
content = content
)
)
},
sendRemoveUI = function(selector, multiple) {
private$sendMessage(
`shiny-remove-ui` = list(
selector = selector,
multiple = multiple
)
)
},
sendInsertTab = function(inputId, liTag, divTag, menuName,
target, position, select) {
private$sendMessage(
`shiny-insert-tab` = list(
inputId = inputId,
liTag = liTag,
divTag = divTag,
menuName = menuName,
target = target,
position = position,
select = select
)
)
},
sendRemoveTab = function(inputId, target) {
private$sendMessage(
`shiny-remove-tab` = list(
inputId = inputId,
target = target
)
)
},
sendChangeTabVisibility = function(inputId, target, type) {
private$sendMessage(
`shiny-change-tab-visibility` = list(
inputId = inputId,
target = target,
type = type
)
)
},
updateQueryString = function(queryString, mode) {
private$sendMessage(updateQueryString = list(
queryString = queryString, mode = mode))
},
resetBrush = function(brushId) {
private$sendMessage(
resetBrush = list(
brushId = brushId
)
)
},
# Public RPC methods
`@uploadieFinish` = function() {
# Do nothing; just want the side effect of flushReact, output flush, etc.
},
`@uploadInit` = function(fileInfos) {
maxSize <- getOption('shiny.maxRequestSize', 5 * 1024 * 1024)
fileInfos <- lapply(fileInfos, function(fi) {
if (is.null(fi$type))
fi$type <- getContentType(fi$name)
fi
})
sizes <- sapply(fileInfos, function(fi){ fi$size })
if (maxSize > 0 && any(sizes > maxSize)) {
stop("Maximum upload size exceeded")
}
jobId <- private$fileUploadContext$createUploadOperation(fileInfos)
return(list(jobId=jobId,
uploadUrl=paste('session', self$token, 'upload',
paste(jobId, "?w=", workerId(), sep=""),
sep='/')))
},
`@uploadEnd` = function(jobId, inputId) {
fileData <- private$fileUploadContext$getUploadOperation(jobId)$finish()
private$.input$set(inputId, fileData)
setSerializer(inputId, serializerFileInput)
snapshotPreprocessInput(inputId, snapshotPreprocessorFileInput)
invisible()
},
# Provides a mechanism for handling direct HTTP requests that are posted
# to the session (rather than going through the websocket)
handleRequest = function(req) {
# TODO: Turn off caching for the response
subpath <- req$PATH_INFO
matches <- regmatches(subpath,
regexec("^/([a-z]+)/([^?]*)",
subpath,
ignore.case=TRUE))[[1]]
if (length(matches) == 0)
return(httpResponse(400, 'text/html', '<h1>Bad Request</h1>'))
if (matches[2] == 'file') {
savedFile <- self$files$get(URLdecode(matches[3]))
if (is.null(savedFile))
return(httpResponse(404, 'text/html', '<h1>Not Found</h1>'))
return(httpResponse(200, savedFile$contentType, savedFile$data))
}
if (matches[2] == 'upload' && identical(req$REQUEST_METHOD, "POST")) {
job <- private$fileUploadContext$getUploadOperation(matches[3])
if (!is.null(job)) {
fileName <- req$HTTP_SHINY_FILE_NAME
fileType <- req$HTTP_SHINY_FILE_TYPE
fileSize <- req$CONTENT_LENGTH
job$fileBegin()
reqInput <- req$rook.input
while (length(buf <- reqInput$read(2^16)) > 0)
job$fileChunk(buf)
job$fileEnd()
return(httpResponse(200, 'text/plain', 'OK'))
}
}
# @description Only applicable to files uploaded via IE. When possible,
# adds the appropriate extension to temporary files created by
# \code{mime::parse_multipart}.
# @param multipart A named list as returned by
# \code{mime::parse_multipart}
# @return A named list with datapath updated to point to the new location
# of the file, if an extension was added.
maybeMoveIEUpload <- function(multipart) {
if (is.null(multipart)) return(NULL)
lapply(multipart, function(input) {
oldPath <- input$datapath
newPath <- paste0(oldPath, maybeGetExtension(input$name))
if (oldPath != newPath) {
file.rename(oldPath, newPath)
input$datapath <- newPath
}
input
})
}
if (matches[2] == 'uploadie' && identical(req$REQUEST_METHOD, "POST")) {
id <- URLdecode(matches[3])
res <- maybeMoveIEUpload(mime::parse_multipart(req))
private$.input$set(id, res[[id]])
return(httpResponse(200, 'text/plain', 'OK'))
}
if (matches[2] == 'download') {
# A bunch of ugliness here. Filenames can be dynamically generated by
# the user code, so we don't know what they'll be in advance. But the
# most reliable way to use non-ASCII filenames for downloads is to
# put the actual filename in the URL. So we will start with URLs in
# the form:
#
# /session/$TOKEN/download/$NAME
#
# When a request matching that pattern is received, we will calculate
# the filename and see if it's non-ASCII; if so, we'll redirect to
#
# /session/$TOKEN/download/$NAME/$FILENAME
#
# And when that pattern is received, we will actually return the file.
# Note that this means the filename and contents could be determined
# a few moments apart from each other (an HTTP roundtrip basically),
# hopefully that won't be enough to matter for anyone.
dlmatches <- regmatches(matches[3],
regexec("^([^/]+)(/[^/]+)?$",
matches[3]))[[1]]
dlname <- URLdecode(dlmatches[2])
download <- self$downloads$get(dlname)
if (is.null(download))
return(httpResponse(404, 'text/html', '<h1>Not Found</h1>'))
filename <- ifelse(is.function(download$filename),
Context$new(getDefaultReactiveDomain(), '[download]')$run(
download$filename
),
download$filename)
# If the URL does not contain the filename, and the desired filename
# contains non-ASCII characters, then do a redirect with the desired
# name tacked on the end.
if (dlmatches[3] == '' && grepl('[^ -~]', filename)) {
return(httpResponse(302, 'text/html', '<h1>Found</h1>', c(
'Location' = sprintf('%s/%s',
URLencode(dlname, TRUE),
URLencode(filename, TRUE)),
'Cache-Control' = 'no-cache')))
}
# Make temp file with the same extension as the user-visible filename.
# If the extension is not used, some functions such as pdf() and zip()
# may append the extension they expect, meaning the data we want will
# be written to a file other than our temp file (e.g. file1231.zip
# instead of file1231.zip).
ext <- tools::file_ext(filename)
if (nzchar(ext))
ext <- paste(".", ext, sep = "")
tmpdata <- tempfile(fileext = ext)
return(Context$new(getDefaultReactiveDomain(), '[download]')$run(function() {
promises::with_promise_domain(reactivePromiseDomain(), {
promises::with_promise_domain(createStackTracePromiseDomain(), {
self$incrementBusyCount()
hybrid_chain(
# ..stacktraceon matches with the top-level ..stacktraceoff..
try(..stacktraceon..(download$func(tmpdata)), silent = TRUE),
function(result) {
if (inherits(result, 'try-error')) {
unlink(tmpdata)
stop(attr(result, "condition", exact = TRUE))
}
if (!file.exists(tmpdata)) {
# If no file was created, return a 404
return(httpResponse(404, content = "404 Not found"))
}
return(httpResponse(
200,
download$contentType %OR% getContentType(filename),
# owned=TRUE means tmpdata will be deleted after response completes
list(file=tmpdata, owned=TRUE),
c(
'Content-Disposition' = ifelse(
dlmatches[3] == '',
'attachment; filename="' %.%
gsub('(["\\\\])', '\\\\\\1', filename) %.% # yes, that many \'s
'"',
'attachment'
),
'Cache-Control'='no-cache')))
},
finally = function() {
self$decrementBusyCount()
}
)
})
})
}))
}
if (matches[2] == 'dataobj') {
# /session/$TOKEN/dataobj/$NAME
dlmatches <- regmatches(matches[3],
regexec("^([^/]+)(/[^/]+)?$",
matches[3]))[[1]]
dlname <- URLdecode(dlmatches[2])
download <- self$downloads$get(dlname)
return(download$filter(download$data, req))
}
return(httpResponse(404, 'text/html', '<h1>Not Found</h1>'))
},
saveFileUrl = function(name, data, contentType, extra=list()) {
"Creates an entry in the file map for the data, and returns a URL pointing
to the file."
self$files$set(name, list(data=data, contentType=contentType))
return(sprintf('session/%s/file/%s?w=%s&r=%s',
URLencode(self$token, TRUE),
URLencode(name, TRUE),
workerId(),
createUniqueId(8)))
},
# Send a file to the client
fileUrl = function(name, file, contentType='application/octet-stream') {
"Return a URL for a file to be sent to the client. If allowDataUriScheme
is TRUE, then the file will be base64 encoded and embedded in the URL.
Otherwise, a URL pointing to the file will be returned."
bytes <- file.info(file)$size
if (is.na(bytes))
return(NULL)
fileData <- readBin(file, 'raw', n=bytes)
if (isTRUE(private$.clientData$.values$get("allowDataUriScheme"))) {
b64 <- rawToBase64(fileData)
return(paste('data:', contentType, ';base64,', b64, sep=''))
} else {
return(self$saveFileUrl(name, fileData, contentType))
}
},
registerDownload = function(name, filename, contentType, func) {
self$downloads$set(name, list(filename = filename,
contentType = contentType,
func = func))
return(sprintf('session/%s/download/%s?w=%s',
URLencode(self$token, TRUE),
URLencode(name, TRUE),
workerId()))
},
# register a data object on the server side (for datatable or selectize, etc)
registerDataObj = function(name, data, filterFunc) {
# abusing downloads at the moment
self$downloads$set(name, list(data = data, filter = filterFunc))
return(sprintf('session/%s/dataobj/%s?w=%s&nonce=%s',
URLencode(self$token, TRUE),
URLencode(name, TRUE),
workerId(),
URLencode(createUniqueId(8), TRUE)))
},
# This function suspends observers for hidden outputs and resumes observers
# for un-hidden outputs.
manageHiddenOutputs = function(outputsToCheck = NULL) {
if (is.null(outputsToCheck)) {
outputsToCheck <- names(private$.outputs)
}
# Find hidden state for each output, and suspend/resume accordingly
for (outputName in outputsToCheck) {
if (private$shouldSuspend(outputName)) {
private$.outputs[[outputName]]$suspend()
} else {
private$.outputs[[outputName]]$resume()
}
}
},
# Set the normal and client data input variables. Normally, managing
# inputs doesn't take immediate effect when there are observers that
# are pending execution or currently executing (including having
# started async operations that have yielded control, but not yet
# completed). The `now` argument can force this. It should generally
# not be used, but we're adding it to get around a show-stopping bug
# for Shiny v1.1 (see the call site for more details).
manageInputs = function(data, now = FALSE) {
force(data)
doManageInputs <- function() {
private$inputReceivedCallbacks$invoke(data)
data_names <- names(data)
# Separate normal input variables from client data input variables
clientdata_idx <- grepl("^.clientdata_", data_names)
# Set normal (non-clientData) input values
private$.input$mset(data[data_names[!clientdata_idx]])
# Strip off .clientdata_ from clientdata input names, and set values
input_clientdata <- data[data_names[clientdata_idx]]
names(input_clientdata) <- sub("^.clientdata_", "",
names(input_clientdata))
private$.clientData$mset(input_clientdata)
self$manageHiddenOutputs()
}
if (isTRUE(now)) {
doManageInputs()
} else {
self$cycleStartAction(doManageInputs)
}
},
outputOptions = function(name, ...) {
# If no name supplied, return the list of options for all outputs
if (is.null(name))
return(private$.outputOptions)
if (! name %in% names(private$.outputs))
stop(name, " is not in list of output objects")
opts <- list(...)
# If no options are set, return the options for the specified output
if (length(opts) == 0)
return(private$.outputOptions[[name]])
# Set the appropriate option
validOpts <- c("suspendWhenHidden", "priority")
for (optname in names(opts)) {
if (! optname %in% validOpts)
stop(optname, " is not a valid option")
private$.outputOptions[[name]][[optname]] <- opts[[optname]]
}
# If any changes to suspendWhenHidden, need to re-run manageHiddenOutputs
if ("suspendWhenHidden" %in% names(opts)) {
self$manageHiddenOutputs(name)
}
if ("priority" %in% names(opts)) {
private$.outputs[[name]]$setPriority(opts[['priority']])
}
invisible()
},
incrementBusyCount = function() {
if (private$busyCount == 0L) {
rLog$asyncStart(domain = self)
private$sendMessage(busy = "busy")
}
private$busyCount <- private$busyCount + 1L
},
decrementBusyCount = function() {
private$busyCount <- private$busyCount - 1L
if (private$busyCount == 0L) {
rLog$asyncStop(domain = self)
private$sendMessage(busy = "idle")
self$requestFlush()
# We defer the call to startCycle() using later(), to defend against
# cycles where we continually call startCycle which causes an observer
# to fire which calls startCycle which causes an observer to fire...
#
# It's OK for these cycles to occur, but we must return control to the
# event loop between iterations (or at least sometimes) in order to not
# make the whole Shiny app go unresponsive.
later::later(function() {
if (private$busyCount == 0L) {
private$startCycle()
}
})
}
}
),
active = list(
session = function() {
shinyDeprecated(
msg = paste("Attempted to access deprecated shinysession$session object.",
"Please just access the shinysession object directly."),
version = "0.11.1"
)
self
}
)
)
.createOutputWriter <- function(shinysession, ns = identity) {
structure(list(impl=shinysession, ns=ns), class='shinyoutput')
}
#' @export
`$<-.shinyoutput` <- function(x, name, value) {
name <- .subset2(x, 'ns')(name)
label <- deparse(substitute(value))
if (length(substitute(value)) > 1) {
# value is an object consisting of a call and its arguments. Here we want
# to find the source references for the first argument (if there are
# arguments), which generally corresponds to the reactive expression--
# e.g. in renderTable({ x }), { x } is the expression to trace.
attr(label, "srcref") <- srcrefFromShinyCall(substitute(value)[[2]])
srcref <- attr(substitute(value)[[2]], "srcref")
if (length(srcref) > 0)
attr(label, "srcfile") <- srcFileOfRef(srcref[[1]])
}
.subset2(x, 'impl')$defineOutput(name, value, label)
return(invisible(x))
}
#' @export
`[[<-.shinyoutput` <- `$<-.shinyoutput`
#' @export
`$.shinyoutput` <- function(x, name) {
name <- .subset2(x, 'ns')(name)
if (getOption("shiny.allowoutputreads", FALSE)) {
.subset2(x, 'impl')$getOutput(name)
} else {
stop("Reading from shinyoutput object is not allowed.")
}
}
#' @export
`[[.shinyoutput` <- `$.shinyoutput`
#' @export
`[.shinyoutput` <- function(values, name) {
stop("Single-bracket indexing of shinyoutput object is not allowed.")
}
#' @export
`[<-.shinyoutput` <- function(values, name, value) {
stop("Single-bracket indexing of shinyoutput object is not allowed.")
}
#' Set options for an output object.
#'
#' These are the available options for an output object:
#' \itemize{
#' \item suspendWhenHidden. When `TRUE` (the default), the output object
#' will be suspended (not execute) when it is hidden on the web page. When
#' `FALSE`, the output object will not suspend when hidden, and if it
#' was already hidden and suspended, then it will resume immediately.
#' \item priority. The priority level of the output object. Queued outputs
#' with higher priority values will execute before those with lower values.
#' }
#'
#' @examples
#' \dontrun{
#' # Get the list of options for all observers within output
#' outputOptions(output)
#'
#' # Disable suspend for output$myplot
#' outputOptions(output, "myplot", suspendWhenHidden = FALSE)
#'
#' # Change priority for output$myplot
#' outputOptions(output, "myplot", priority = 10)
#'
#' # Get the list of options for output$myplot
#' outputOptions(output, "myplot")
#' }
#'
#' @param x A shinyoutput object (typically `output`).
#' @param name The name of an output observer in the shinyoutput object.
#' @param ... Options to set for the output observer.
#' @export
outputOptions <- function(x, name, ...) {
if (!inherits(x, "shinyoutput")) {
stop("x must be a shinyoutput object.")
}
if (!missing(name)) {
name <- .subset2(x, 'ns')(name)
} else {
name <- NULL
}
.subset2(x, 'impl')$outputOptions(name, ...)
}
#' Get information about the output that is currently being executed.
#'
#' @return A list with information about the current output, including the
#' `name` of the output. If no output is currently being executed, this will
#' return `NULL`.
#'
#' @param session The current Shiny session.
#'
#' @export
getCurrentOutputInfo <- function(session = getDefaultReactiveDomain()) {
session$getCurrentOutputInfo()
}
#' Add callbacks for Shiny session events
#'
#' These functions are for registering callbacks on Shiny session events.
#' `onFlush` registers a function that will be called before Shiny flushes
#' the reactive system. `onFlushed` registers a function that will be
#' called after Shiny flushes the reactive system. `onSessionEnded`
#' registers a function to be called after the client has disconnected.
#'
#' These functions should be called within the application's server function.
#'
#' All of these functions return a function which can be called with no
#' arguments to cancel the registration.
#'
#' @param fun A callback function.
#' @param once Should the function be run once, and then cleared, or should it
#' re-run each time the event occurs. (Only for `onFlush` and
#' `onFlushed`.)
#' @param session A shiny session object.
#'
#' @export
onFlush <- function(fun, once = TRUE, session = getDefaultReactiveDomain()) {
session$onFlush(fun, once = once)
}
#' @rdname onFlush
#' @export
onFlushed <- function(fun, once = TRUE, session = getDefaultReactiveDomain()) {
session$onFlushed(fun, once = once)
}
#' @rdname onFlush
#'
#' @seealso [onStop()] for registering callbacks that will be
#' invoked when the application exits, or when a session ends.
#' @export
onSessionEnded <- function(fun, session = getDefaultReactiveDomain()) {
session$onSessionEnded(fun)
}
flushPendingSessions <- function() {
lapply(appsNeedingFlush$values(), function(shinysession) {
tryCatch(
shinysession$flushOutput(),
stop = function(e) {
# If there are any uncaught errors that bubbled up to here, close the
# session.
shinysession$close()
}
)
NULL
})
}
.globals$onStopCallbacks <- Callbacks$new()
#' Run code after an application or session ends
#'
#' This function registers callback functions that are invoked when the
#' application exits (when [runApp()] exits), or after each user
#' session ends (when a client disconnects).
#'
#' @param fun A function that will be called after the app has finished running.
#' @param session A scope for when the callback will run. If `onStop` is
#' called from within the server function, this will default to the current
#' session, and the callback will be invoked when the current session ends. If
#' `onStop` is called outside a server function, then the callback will
#' be invoked with the application exits. If `NULL`, it is the same as
#' calling `onStop` outside of the server function, and the callback will
#' be invoked when the application exits.
#'
#'
#' @seealso [onSessionEnded()] for the same functionality, but at
#' the session level only.
#'
#' @return A function which, if invoked, will cancel the callback.
#' @examples
#' ## Only run this example in interactive R sessions
#' if (interactive()) {
#' # Open this application in multiple browsers, then close the browsers.
#' shinyApp(
#' ui = basicPage("onStop demo"),
#'
#' server = function(input, output, session) {
#' onStop(function() cat("Session stopped\n"))
#' },
#'
#' onStart = function() {
#' cat("Doing application setup\n")
#'
#' onStop(function() {
#' cat("Doing application cleanup\n")
#' })
#' }
#' )
#' }
#' # In the example above, onStop() is called inside of onStart(). This is
#' # the pattern that should be used when creating a shinyApp() object from
#' # a function, or at the console. If instead you are writing an app.R which
#' # will be invoked with runApp(), you can do it that way, or put the onStop()
#' # before the shinyApp() call, as shown below.
#'
#' \dontrun{
#' # ==== app.R ====
#' cat("Doing application setup\n")
#' onStop(function() {
#' cat("Doing application cleanup\n")
#' })
#'
#' shinyApp(
#' ui = basicPage("onStop demo"),
#'
#' server = function(input, output, session) {
#' onStop(function() cat("Session stopped\n"))
#' }
#' )
#' # ==== end app.R ====
#'
#'
#' # Similarly, if you have a global.R, you can call onStop() from there.
#' # ==== global.R ====
#' cat("Doing application setup\n")
#' onStop(function() {
#' cat("Doing application cleanup\n")
#' })
#' # ==== end global.R ====
#' }
#' @export
onStop <- function(fun, session = getDefaultReactiveDomain()) {
if (is.null(session)) {
return(.globals$onStopCallbacks$register(fun))
} else {
# Note: In the future if we allow scoping the onStop() callback to modules
# and allow modules to be stopped, then session_proxy objects will need
# its own implementation of $onSessionEnded.
return(session$onSessionEnded(fun))
}
}
# Helper class for emitting log messages to stdout that will be interpreted by
# a Shiny Server parent process. The duration it's trying to record is the time
# between a websocket message being received, and the next flush to the client.
ShinyServerTimingRecorder <- R6Class("ShinyServerTimingRecorder",
cloneable = FALSE,
public = list(
initialize = function() {
private$shiny_stdout <- if (exists(".shiny__stdout", globalenv()))
get(".shiny__stdout", globalenv())
else
NULL
private$guid <- NULL
},
start = function(guid) {
if (is.null(private$shiny_stdout)) return()
private$guid <- guid
if (!is.null(guid)) {
private$write("n")
}
},
stop = function() {
if (is.null(private$shiny_stdout)) return()
if (!is.null(private$guid)) {
private$write("x")
private$guid <- NULL
}
}
),
private = list(
shiny_stdout = NULL,
guid = character(),
write = function(code) {
# eNter or eXit a flushReact
writeLines(paste("_", code, "_flushReact ", private$guid,
" @ ", sprintf("%.3f", as.numeric(Sys.time())),
sep=""), con=private$shiny_stdout)
flush(private$shiny_stdout)
}
)
)
missingOutput <- function(...) req(FALSE)
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