add_velo_trace: Refactoring plot_velo into multiple functions moving forwards

In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader

Description

Refactoring plot_velo into multiple functions moving forwards

Usage

add_velo_trace(
  txis,
  embed = "UMAP",
  replace = FALSE,
  colr = "velocity_pseudotime",
  p = NULL,
  ...
)

Arguments

txis	a SingleCellExperiment with metadata(txis)$scVelo
embed	which reducedDims() element to use for plotting? (UMAP)
replace	replace any existing metadata element embedded? (FALSE)
colr	column(s) to use for colors (default: velocity_pseudotime)
p	an existing plotly object to add the trace to (NULL)
...	optional arguments to pass to plotly::plot_ly()

Value

       a plotly trace

trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.