plot_eligible_cells: Plot a heatmap of cells x samples that fit certain sampling...
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
See Also
View source: R/plot_eligible_cells.R
Description
See the documentation for find_eligible_cells regarding these criteria.
This can be a useful diagnostic when setting maxcells for label_cells.
Usage
1
plot_eligible_cells(txis, mincells = 10, logcells = FALSE, ...)
Arguments
txis
SingleCellExperiment where !is.null(colLabels(txis))
mincells
min cells per cluster per sample (see Details) (10)
logcells
use log1p(cells) instead of raw cell numbers? (FALSE)
...
additional arguments to pass to ComplexHeatmap::Heatmap
See Also
label_cells
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
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Description Usage Arguments See Also
View source: R/plot_eligible_cells.R
Description
See the documentation for find_eligible_cells regarding these criteria.
This can be a useful diagnostic when setting maxcells for label_cells.
Usage
1 | plot_eligible_cells(txis, mincells = 10, logcells = FALSE, ...)
|
Arguments
txis |
SingleCellExperiment where !is.null(colLabels(txis)) |
mincells |
min cells per cluster per sample (see Details) (10) |
logcells |
use log1p(cells) instead of raw cell numbers? (FALSE) |
... |
additional arguments to pass to ComplexHeatmap::Heatmap |
See Also
label_cells
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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