make_velo_index: aped from...
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
Value
View source: R/make_velo_index.R
Description
Given a fasta and a gtf, make a spliced index out of it. Like duh, the idea
is to eventually be able to create linkedTxomes that are really pangenomes.
Usage
1
make_velo_index(gtf, fa = NULL, flank = 90L, intron = TRUE, verbose = TRUE)
Arguments
gtf
a GTF file, usually from ENSEMBL
fa
a FASTA file, usually a genome (same as .gtf but .fa)
flank
how many bases of intron (90)
intron
include unspliced transcripts? (TRUE; for debugging)
verbose
squawk? (TRUE)
Value
1
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
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Description Usage Arguments Value
View source: R/make_velo_index.R
Description
Given a fasta and a gtf, make a spliced index out of it. Like duh, the idea is to eventually be able to create linkedTxomes that are really pangenomes.
Usage
1 | make_velo_index(gtf, fa = NULL, flank = 90L, intron = TRUE, verbose = TRUE)
|
Arguments
gtf |
a GTF file, usually from ENSEMBL |
fa |
a FASTA file, usually a genome (same as .gtf but .fa) |
flank |
how many bases of intron (90) |
intron |
include unspliced transcripts? (TRUE; for debugging) |
verbose |
squawk? (TRUE) |
Value
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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